2024-04-19 11:57:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025165013 4610 bp mRNA linear VRT 24-MAY-2018 DEFINITION PREDICTED: Python bivittatus argonaute 2, RISC catalytic component (AGO2), transcript variant X2, mRNA. ACCESSION XM_025165013 VERSION XM_025165013.1 DBLINK BioProject: PRJNA238085 KEYWORDS RefSeq. SOURCE Python bivittatus (Burmese python) ORGANISM Python bivittatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Henophidia; Pythonidae; Python. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006532583.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Python bivittatus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4610 /organism="Python bivittatus" /mol_type="mRNA" /db_xref="taxon:176946" /chromosome="Unknown" /sex="female" /tissue_type="liver" /country="USA: Texas" gene 1..4610 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:103061429" CDS 345..2876 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_025020781.1" /db_xref="GeneID:103061429" /translation="
MQAYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKMDIYHYELDIKPEKCPRRVNREIVEHMVQHFKAQIFGDRKPVFDGRKNLYTAMPLPIGRDKQVELEVTLPGEGKDRIFKVAIKWMSVVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPFVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKTFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 534..794 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 822..974 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 975..1337 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1131..1133,1176..1178,1218..1220,1230..1232, 1284..1286,1305..1307,1311..1313) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1470..2747 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1881..1883,1893..1895,1929..1940,1947..1949, 1971..1973,1980..1982,1992..1994,2004..2006) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2085..2087,2091..2093,2301..2303,2715..2717) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
cgttgtgtagcttttcctagacgagcattgaagtctctcctttcagggcaactagtctggtttgcattgtggctgctgctgttgctgtgatgtcagagtgattatggttgcctctgtagatgattttgatcaaacatgtcctctcttttgatatctagcctagtgtattggtactgttctattgttagtcgtggcaaaaggtggatgccggttttaaagaacaagagatacctttccttctttaaagatggaggattagttggaaagaatgacagaacttgcatcacttgttgtgatttccctctcttgtagtccttacaacgcctccatcactgccacctccaatgcaggcgtatgcatttaaacctccccctcgacctgatttcggtacttcaggaagaacaatcaaactgcaagccaatttctttgaaatggacattcccaaaatggacatctaccattatgaattggatataaagcccgagaagtgtcctagaagagttaacagagaaatagttgaacacatggtccagcactttaaagcgcagatatttggagatcgcaagccagtatttgatgggagaaaaaatctctatacagcaatgccacttccaatagggagagataaacaggtggaattggaggtcactttgccaggagaagggaaggacagaatatttaaggtggccatcaagtggatgtcagttgtgagtctgcaggcgttgcatgatgctctctctggtcgtcttccaagtgttccttttgaaaccattcaggctcttgatgttgtgatgaggcatctgccctctatgagatatactccagtgggccgttccttttttactgcatcagaaggatgttctaatcctttgggaggtggcagagaagtttggtttggattccatcagtcagttaggccttcactgtggaaaatgatgctgaacattgatgtctctgcgacagcattttataaggcacagccagtaattgaatttgtatgtgaagttcttgatttcaaaagtattgaagaacaacagaaacctctgacagattcccaaagggttaagtttaccaaagaaattaaaggtcttaaggtggaaattactcattgtgggcaaatgaaaagaaaataccgagtatgcaacgttaccagaaggccagcaagtcaccaaacatttccccttcagcaggagagcggtcagactgttgaatgcaccgtagctcaatattttaaggacaggcacaaattagtattacgttatcctcatcttccatgtttacaagttggacaggagcagaaacacacataccttcccctagaggtatgcaatatagttgcaggacagagatgtattaagaagctgacagacaatcaaacttctactatgattagagcaacagcgagatcagccccagatcgtcaagaagagatcagcaaattgatgcgaagtgcaagttttaatactgaccctttcgttcgtgaatttggaattatggtcaaagatgaaatgacagatgtaacggggagagtgttacagccaccttcaattctctatggaggccggaacaaagcaattgctaccccagtacaaggggtttgggatatgaggaacaaacagtttcatactggaattgaaataaaggtctgggccattgcttgctttgctccccaacgtcagtgcactgaagtccatcttaagaccttcacggaacaactgaggaagatatcaagagatgcgggaatgcccatccagggtcagccttgtttctgtaaatatgcccagggagcagacagcgtggaaccgatgttccgccatctcaagaacacctatgctggcctgcagcttgtggttgtcattctgcctgggaaaactcctgtttatgcggaagtgaagcgtgttggtgataccgtgttgggaatggccacacagtgtgtgcagatgaaaaatgtgcaaaggaccaccccacaaacactttccaacttgtgcttaaagatcaatgtcaaactaggaggagtaaataacattttattgccacaaggaagacctccagtatttcagcagcctgtcatcttcctgggtgcagacgtcactcatccaccagccggagatgggaaaaaaccatctattgctgctgttgtaggcagcatggatgcccatccgaatcgctactgtgccactgtgagggtccagcagcatcgccaagaaataattcaagacttggctgccatggttagggagctgctgatccagttctacaaatcaacccgattcaagccaacacggattattttctatagggatggcgtttccgaggggcagttccagcaggttcttcatcatgaattgctggctatccgagaagcatgcattaagctagaaaaggattatcagccggggatcacgttcattgttgtgcagaaaagacatcacaccagactgttttgcacagacaaaaatgaaagagttgggaaaagtggaaacattccagcaggtacaaccgtggacacaaaaatcacccacccttcggagtttgacttctatctgtgtagtcatgctgggattcagggcacaagcagaccgtctcattaccatgttctctgggatgacaatcgcttctcttcagatgaacttcagatcctcacttaccaactgtgtcatacgtatgtgcgttgtactcgttctgtttcaatccctgcgccggcgtactatgcacacctggttgccttcagagccaggtatcatttggtggataaagagcatgacagtgctgaaggaagccacacttctgggcagagcaacggcagagaccatcaagccctcgcgaaagctgttcaggtccaccaggacacattgcgcaccatgtactttgcttgatgtggccgtgatttgaggaactcagttctgagttggattcacaggagaccagctgcacttagaccaacagttgcccaagctatagcgacagccagcaaggagtgatgcatctttatttttaattcggggggggggggatgatggtaatgatgatgattgtgattctgtttgcaagaacgcctttcatccagaatttcagacttgagtgtgaactgcagacctttacaaaattgcacagcttttagatgtgtggatttgccaaaatcaaaagctgcttgtcaggagaaaaggaaaaaaaaaaaaaatgaaaacccacgttttctaactaacttagagctgtgatctcagggctaaaaacaacacttctcgttttagttatgactttttcagatacacttctttgtaaaaatctgaaaaatatccaattaagatcagattgagcgggcctgggaaaaacgatgaatttgcttttattccttaaaaaaaacaaagcgctagttttgatgccattgaagtctttgatccttctggatgcatttgtaaaatgtttttgtactgatgtgcaacaggagtgagcgaatccgggtttgtcctttgctgtcttattgataagaagtctgtgaaggtctatgggcaaaaatgtatttttgaagttcgttcttgaatgtctttcattgtgctgtttaaattttttgtagggtgcgttatggaattatttcagttacaaaaagaagtttatctatactttttattaggtccactgaaagattagtgaagtgtgccactttttaaaagaagtttattttttcttaaaataatccattttgattactaatcatggagtttgtcctataggactgtgacacttaattttccaaagcttttctaaagaatacgggtctgtggtgatacagtacaatctctttcactgttatgtttgaattaatgtaaaatttatatatgtttcacagtattaacatgatagcatagatactatttatatttatttactaaagagtgctcaacatagttctgtttaacatatcacaaactgaagaatgctttggagttttaaagtgggaagcttatatgtggacaagagtgatttgggtcgaattcaccaactgtagcttcttgcaggttccctgttcattttaacgaggcttgtgtgggacacctcatcccggcctccttgaaatgaagcaaggaggaccggccctggtgtgttgtccctttaaagaacagggatatgcaactaccttgtatggcagaggggagacgtgcttggcgtttatatcattttttaaagctagtgtcttggaaggatttagaagaattcacaggctgtagtttagacaagagcatcaaaggaagtttcgtagttcattcaagcacataaattatttttttctgttggatcatctgagttacagaaatggaaggaaagagatctgtgtttatttggggagggaagtgatggcgtaatacgtaatgtggacaaaatgtgttaagtgggaagggcgttttctttggagaaggtgaacccctcagaggcctgctaaaaataaaagcttctcttactgtgcgcaagattcatccgaccaaatattcaaagctaccgttgcactaatgaggacaacaggaacactactaaaatactgtggattgggaagccttcttcctcttccgatcttctaggaattaaaaaaaaaaaaatactaaccgcatccaggc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]