2024-04-19 20:33:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_024643007 2901 bp mRNA linear INV 10-APR-2018 DEFINITION Strongyloides ratti Protein argonaute-4 (SRAE_X000201400), partial mRNA. ACCESSION XM_024643007 VERSION XM_024643007.1 DBLINK BioProject: PRJNA304930 BioSample: SAMEA1682816 KEYWORDS RefSeq. SOURCE Strongyloides ratti ORGANISM Strongyloides ratti Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Tylenchina; Panagrolaimomorpha; Strongyloidoidea; Strongyloididae; Strongyloides. REFERENCE 1 (bases 1 to 2901) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-APR-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 AUTHORS Aslett,A.Martin. TITLE Direct Submission JOURNAL Submitted (16-SEP-2014) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge Cambridgeshire. CB10 1SA, United Kingdom COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_020171512). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2901 /organism="Strongyloides ratti" /mol_type="mRNA" /strain="ED321 Heterogonic" /db_xref="taxon:34506" /chromosome="X" /map="unlocalized" gene <1..>2901 /locus_tag="SRAE_X000201400" /db_xref="GeneID:36385086" CDS 1..2901 /locus_tag="SRAE_X000201400" /codon_start=1 /product="Protein argonaute-4" /protein_id="XP_024499485.1" /db_xref="GeneID:36385086" /translation="
MAATGIDHQQNMNNMFDALSFDDNGTIQMPNSMTGFLGLQDANHHYIQNDFFTTQITNLPQDLSVLHTGSQSIMNNEGNMSDNHSLLSFAPGVPMMSTISDDQQALIPSQQLSFTFPIPKRPDHGQQGREIALKANHFKVSIPGGNVQYYQVDVSPEKCPRKVNRDVIKALISSYPNVFVNTKLVYDGKKNMYTRELLPIGTDRNEFEVNLSGDSNQERKFTVGIRYQATVSLQRLEDAMAGIIHSIPADAVQAMDVILRHLPSTQYTPVGRSFFSSPHTTKPQHSGQHHHGQDYGKLGGGREVWFGFHQSVRPSEWRMMLNIDVSATAFYRRMSVLEFLAEVLEQPVSTFAERRSLSDAQRVKFTKEMRGLKIEITHCGQMRRKYRVCNVTRRPAQSQTFPLLNDNGMTTDCTVAKYFLDKYNMQLKYPYLPCLQVGQEHKNIYLPLEVCDIVSGQRCIKKLTDTQTSTMIKATARSAPEREREITNLVQKADFTSDPYAAEFGISITPEMTEVKGRVLPAPKLLYGGRTKTTALPNQGVWDMRGKQFHTGIEVKMWAIACFAQQTHVKEHDLRSFTGNLQRISSDAGMPIIGQPCFCKYAVGVDQVEPMFQYLKNTYPGLQLVVVVLPGKTPVYAEVKRVGDTVLGIATQCVQAKNVIKTTPQTLSNLCLKMNVKLGGVNSILLPSVRPAVFNEPVIFLGADITHPPAGDSRKPSIAAVVGSMDAHPSRYAATVRVQQHRHEIITDLAYMVRELLVQFYRNTHFKPTKIVLYRDGVSEGQFLNVLQYELRAIREACMTLERGYQPGITFIAVQKRHHTRLFACDRRDQVGKAQNIPPGTTVDAGITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNNLKADELQQLTYQMCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDREHDSGEGSQPSGTSEDTTLSNLARAVQVHPDANNVMYFA"
misc_feature 529..777 /locus_tag="SRAE_X000201400" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 805..996 /locus_tag="SRAE_X000201400" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1000..1362 /locus_tag="SRAE_X000201400" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1156..1158,1201..1203,1243..1245,1255..1257, 1309..1311,1330..1332,1336..1338) /locus_tag="SRAE_X000201400" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1495..2772 /locus_tag="SRAE_X000201400" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1906..1908,1918..1920,1954..1965,1972..1974, 1996..1998,2005..2007,2017..2019,2029..2031) /locus_tag="SRAE_X000201400" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2110..2112,2116..2118,2326..2328,2740..2742) /locus_tag="SRAE_X000201400" /note="active site" /db_xref="CDD:240015" ORIGIN
atggctgcaactggcattgatcatcaacaaaatatgaataacatgtttgatgcgttgagttttgatgataacggaactatacaaatgccaaattctatgactggatttttgggacttcaagatgctaatcatcattatatccagaatgatttttttacaactcaaataacaaacctacctcaagatttgtcggtgttgcatactggatcccaaagtattatgaacaatgaagggaatatgagcgacaatcactcattactctcatttgcacctggagtcccaatgatgagtactataagcgacgatcaacaagcgttgataccaagtcaacagttatcattcacttttcctatcccaaaacgtcctgatcatggccagcaaggaagagaaatagccttgaaggcaaatcattttaaggtatcaattccaggaggtaatgtacaatattatcaagtagatgtatctccagagaaatgtccaagaaaagtaaaccgtgacgtaataaaagctttaatttcttcttatccaaatgttttcgttaatacaaaattagtttatgatggtaaaaagaatatgtatacaagagagttattaccaataggtactgatagaaatgaatttgaagtcaatttatctggagattcaaatcaagaaagaaaatttactgttggaatacgttatcaagcaactgtttcattacaacgtcttgaagatgcaatggctggaattattcatagtattcctgctgatgctgtacaagctatggatgttattttaaggcatttaccatcaacacaatatactcctgttggaagatcatttttctcatcaccacatacaacaaaacctcaacatagtggacaacatcatcatggacaagattatggaaaactgggaggtgggcgagaggtttggtttggtttccatcaatctgtaaggccatcagaatggcgcatgatgttaaatattgatgtctcagctacagcattttatcgtagaatgtctgtattagaatttttagctgaagtattggaacaacctgtctcaacatttgctgaaagacgttccttatctgatgctcaaagagttaaatttacaaaagaaatgagaggattaaaaattgaaataactcattgcggacaaatgcgtagaaaatatagagtttgcaatgtcacgagaagaccggctcagtctcaaacattcccacttcttaatgacaatggaatgactactgattgtactgttgcaaaatatttccttgacaaatataatatgcaattaaaatacccttacttaccatgtttacaagttggtcaagaacataaaaatatatacctgccattagaagtttgtgatattgtttcaggacaaagatgcattaaaaaattaactgatactcaaacttcaacaatgattaaagcaacagcacgaagtgctcctgaaagagaacgtgaaatcacaaatttagttcaaaaagcagattttacaagtgatccatatgctgctgaatttggaatttctataacacctgaaatgactgaagttaaaggtcgcgttcttccagcaccaaaacttctttatggtgggcgtactaaaacaacagccttacctaatcaaggagtttgggatatgagaggaaaacaatttcatacaggaattgaagttaaaatgtgggctatagcatgttttgctcaacaaactcatgtcaaagaacacgatcttagaagttttacaggaaatcttcaacgcatttcttctgatgctggtatgccaataattggacaaccatgcttctgtaaatatgcagttggcgttgatcaagttgagccaatgtttcaatacttaaaaaatacttatcctggtcttcaattagttgttgttgttttaccaggaaaaacaccagtttatgcggaagttaaacgtgttggtgatactgtattaggtattgcaacacaatgtgttcaagctaaaaatgttattaaaacaacaccacaaacactttcaaatttatgtttaaaaatgaatgttaaattaggtggtgttaattcaattttacttccttcagttagaccagctgtttttaatgaacctgtaatatttttaggtgctgatataacacatccaccagcaggtgattctagaaaaccatcaattgctgcagttgttggatcaatggatgctcatccatcacgttatgctgctacagttcgtgttcaacaacatagacatgaaataataactgatcttgcctatatggttagagaacttcttgttcaattttatagaaatactcattttaaaccaacaaaaattgtactttaccgtgatggtgtttctgaaggtcaatttttaaatgttcttcaatatgaattaagagcaatacgtgaagcttgcatgacattagaaagaggatatcaacctggtattacttttattgctgttcaaaaacgtcatcatacaagactttttgcttgtgatagaagagatcaagttggtaaagctcaaaacattccaccaggtacaactgttgatgctggtattactcatccaacagaatttgatttttacctttgttcacatgcaggaattcaaggtacctcacgtccttcacattaccatgtactttgggatgataataatcttaaggctgatgaattacagcaattgacttatcaaatgtgtcatacttatgttcgttgtacaagatcagtatcaattccagctcctgcttattatgcacatcttgtagctttccgtgctcgttatcatttagttgatcgtgaacatgattctggcgaaggttcacaaccatctggaacttcagaagatacaacattatcaaacttggctcgtgctgttcaagttcatcctgatgccaataacgttatgtattttgcctaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]