LOCUS       XM_024000193            2081 bp    mRNA    linear   VRT 17-DEC-2024
DEFINITION  PREDICTED: Salvelinus sp. IW2-2015 vimentin (vim), mRNA.
ACCESSION   XM_024000193
VERSION     XM_024000193.2
DBLINK      BioProject: PRJNA433373
KEYWORDS    RefSeq.
SOURCE      Salvelinus sp. IW2-2015
  ORGANISM  Salvelinus sp. IW2-2015
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salvelinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_036854.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 17, 2024 this sequence version replaced XM_024000193.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_002910315.2-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/13/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Salvelinus sp. IW2-2015"
                     /mol_type="mRNA"
                     /db_xref="taxon:2691554"
                     /linkage_group="LG14"
     gene            1..2081
                     /gene="vim"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 106 long SRA reads, 19
                     Proteins"
                     /db_xref="GeneID:111973044"
     CDS             122..1510
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_023855961.1"
                     /db_xref="GeneID:111973044"
                     /translation="

MNRTTNRQTTSSSSYKRMFGGEGRPGVGMARSTLSSRQYSSPVRSSRMSYSVSSAPPSIYASKNVRLRSSAPMPRLSSDTVDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILLAELEQIKGKGASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNLGEDIERLREKLQDEMIQKEEAEHNLQSFRQDVDNASLARLDLERKVESLQEEILFLRKLHDEEVAELQAQIQDQHIQIDMDVAKPDLTAALRDVRVQYETLASRNLQESEDWYKSKFADLSEAANRNTDAIRQAKQEANEYRRQVQALTCEVDSLKGTNESMERQMRELEESFGCEANNFQDTISRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNLRESMLEARPMIDNLSKKVVIKTIETRDGHVINESTQNHDDLE"

     misc_feature    149..415
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:461414"
     misc_feature    416..1342
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     polyA_site      2081
                     /gene="vim"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

cgctggggtagtactgttcggaggtttcatcacacactgaagtggaagtccagtttgagagaaggcatttacacagcttttttgaagaaagaagaaaccttygggaccaaaggattacaatatgaaccggacaaccaacaggcaaaccacctcttcatcctcttacaagaggatgttcggcggcgaaggacggcctggtgtcgggatggctcggtccaccttgtctagccgccagtactcgagcccggtgcgctcctctcggatgtcctacagcgtctcctccgctccgccgagcatctacgcctccaagaatgtccgacttcgcagcagcgccccgatgccccggctctcatcggacaccgtggacttcgccctgtccgatgccatcaactcggagttcaaagccaaccggaccaacgagaaggcggagatgcagcacctcaatgacaggttcgccagctacatcgacaaagtgcgctttctggagcagcaaaacaagatcctgttagcggagctggagcagataaagggcaaaggcgcgtcccgtatcggggatctgtacgaggatgagatgagggatctgcggaggcaggtggaccagctcaccaatgagaaagcccatgtcgaagtggaccgggacaacctgggagaggacatcgagaggctcagagagaagctccaagatgagatgatccagaaagaggaagcagagcacaacctgcagagcttcagacaggatgtggacaatgcctcccttgctcgtctggacctggagaggaaggtggagtctcttcaggaggaaatcctcttcctcaggaagctgcatgacgaggaggttgctgagctgcaggcacagatccaggatcagcatatccagatcgatatggatgtggccaagcctgatttgacggctgccctaagggacgtgcgtgtgcagtacgagaccttggccagcaggaacctccaggagtctgaagactggtacaaatccaagtttgctgacctgtcggaggctgcgaatcgtaacaccgatgccatccggcaggccaagcaggaggctaacgagtacaggcgtcaggtacaggccctaacctgtgaggtggactctctcaaaggaactaatgagtccatggagcgtcagatgagggagctggaggagagctttggctgcgaggctaataacttccaagacaccatctctcgcctggaggacgacatcaggaacatgaaggatgagatggcccgtcacctcagagagtaccaggaccttctcaacgtcaagatggccctggacatagagatcgccacctacaggaagctgctggagggagaagagagcagaatcaccactcccatgcccaacttctcatcatttaacttgagagaatccatgctggaggcaagaccaatgattgacaacctgtcaaagaaggttgtgatcaagaccattgaaactagagatggtcatgtgatcaatgagtccacccagaaccatgatgacttggagtgaacatcacatagcatgtctctattgagaagagaaaatagttagcagcagcatactgggggggggggggtaaaacactgtcggggatgaggagaaagcaaaatgggatatttctgtttgtgagtaaaactaaacaaacagctttgaaagtgcctttttgacacgttggggtacttgctgatctggtagggttgttgctaggtaggatagacactgtttagaggagatgaaaccagctttactgaatgtttctgtttgaccacagacaccgggcaagtctcaaatgacacttatttttttctatgttatagtgctctactttttatagggctctagtgaaaagtagtgcactaagggaatagggtgtcatttgtgatgcaaccacactgagtctagtttacacttgagctgttagacttagaccatagcaacactttgagcaatggctgtttttttctattctaatttaccaaaatcatggaaaggattgaagcactgtttcatgtacacaaacaagaccaacaccaaactgtcaacgcttctgtaagtcaataaagctttgaggaaaataaaa

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