2024-04-24 06:23:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023758506 2341 bp mRNA linear MAM 26-JAN-2018 DEFINITION PREDICTED: Myotis lucifugus argonaute 4, RISC catalytic component (AGO4), transcript variant X5, mRNA. ACCESSION XM_023758506 VERSION XM_023758506.1 DBLINK BioProject: PRJNA208947 KEYWORDS RefSeq. SOURCE Myotis lucifugus (little brown bat) ORGANISM Myotis lucifugus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005871179.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Myotis lucifugus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2341 /organism="Myotis lucifugus" /mol_type="mRNA" /db_xref="taxon:59463" /chromosome="Unknown" /sex="female" /country="USA: Framingham, MA" gene 1..2341 /gene="AGO4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:102437202" CDS 150..2225 /gene="AGO4" /codon_start=1 /product="protein argonaute-4 isoform X4" /protein_id="XP_023614274.1" /db_xref="GeneID:102437202" /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQMLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEVSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKAERMFLYALVYHPQLKITTGRMEPNKLPSNLCLDGK"
misc_feature 159..413 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 444..596 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 597..959 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(753..755,798..800,840..842,852..854,906..908, 927..929,933..935) /gene="AGO4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1098..>2123 /gene="AGO4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1509..1511,1521..1523,1557..1568,1575..1577, 1599..1601,1608..1610,1620..1622,1632..1634) /gene="AGO4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" ORIGIN
gtcctggccttggaactgttggaaaaccaattcgactgttagccaatcattttcaggttcagattcctaaaatagatgtgtatcactatgatgtggatattaaaccagaaaaacggcctcgtagagtcaacagggaggtagtagatacaatggtgcggcacttcaagatgcaaatatttggtgatcggcagcctggctatgatggcaaaagaaacatgtacacagcacatccactgccaattggacgggatagggttgatatggaagtgacccttccaggtgagggtaaagaccaaacctttaaagtgtctgttcagtgggtgtccgttgtgagccttcagatgcttttagaagctttagccgggcacttgaatgaagtcccagatgactcagtacaagcacttgatgttattacaagacacctcccctccatgaggtacactccagtgggccgttcctttttctcgcctccggaaggttactaccaccctctgggagggggcagggaggtttggtttggctttcatcagtctgtgagacctgccatgtggaatatgatgctcaatattgatgtatctgcaactgctttctaccgggctcagcctatcattgagttcatgtgtgaggtattggacattcagaatatcaacgaacagaccaaacctctaacagactcccagcgtgtcaagtttaccaaagaaatcagaggtcttaaagttgaggtgactcactgtggacagatgaagcgaaaatatcgagtttgtaatgtaaccagacggccagccagtcatcaaacttttcctttacagctagaaaatggtcaagccatggaatgtactgtagctcaatattttaagcaaaagtatagtctgcagctgaaatatccccatcttccctgtctccaagtgggacaagaacaaaagcatacatacttgccacttgaggtctgtaatatagtggcaggacagcgatgtataaagaaacttacagacaatcagacttccacgatgatcaaagccacagcaagatctgctcctgacagacaggaagaaatcagtagactggtgaagagtaacagcatggtgggtggacctgatccataccttaaagaatttggtattgttgtccacaatgaaatgacagagctcacaggcagggtacttccagcaccaatgctacagtatggaggccggaataaaacagtagccacacccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagttgcttgttttgcgcctcagaaacaatgtagggaagatttactaaagagtttcactgaccagctccgtaaaatctctaaggatgcaggaatgcccatccagggccagccatgtttctgcaagtatgcacaaggtgcagacagcgtggagcctatgtttaaacatctgaaaatgacatatgtgggcctacagctaatagtggtgatcttgcctgggaagacaccagtatatgcggaggtgaaacgtgttggagataccctcctgggtatggccacccagtgtgtccaggtaaaaaatgtagtgaagacctcaccccagaccctttccaacctttgcctgaagataaatgcaaagcttggaggaattaacaacgtgcttgtacctcatcaaaggccatcagtgttccagcagcctgtcatcttcctgggagcagatgtcacccacccccctgcaggggacgggaagaagccttccattgctgctgttgttggcagtatggatggccaccccagccggtactgtgccactgttcgggtgcagacctcccgccaggaggtctcccaggagctcctctatagtcaggaggtgatccaggacctcactaacatggttcgagagctgctgatccagttctacaagtccacacgcttcaaacctacacggatcatctactaccgtggaggggtatccgagggacaaatgaagcaggtagcttggccagaactaatagcaattcgaaaggcatgtattagcttggaagaagattaccggccaggaataacctacattgtggtacagaaaagacatcacacacgactcttctgtgcggataaagcagaaaggatgttcttgtatgcattggtgtatcatcctcagctgaagataaccacagggagaatggagccaaataaactcccatcaaatttgtgcctagatggcaaataaaattcctcacatggaaccctgctgtacagcagaagagaatgaaaattgtccaaatagcaagatttaatttctttccttgtaaatgcatttctaaagttctccctctgcttttctag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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