2024-04-19 12:10:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023701039 2768 bp mRNA linear ROD 24-JAN-2018 DEFINITION PREDICTED: Octodon degus protein argonaute-3 (LOC101573127), transcript variant X4, mRNA. ACCESSION XM_023701039 VERSION XM_023701039.1 DBLINK BioProject: PRJNA193441 KEYWORDS RefSeq. SOURCE Octodon degus (degu) ORGANISM Octodon degus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004524706.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Octodon degus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2768 /organism="Octodon degus" /mol_type="mRNA" /isolate="3935" /db_xref="taxon:10160" /chromosome="Unknown" /sex="female" gene 1..2768 /gene="LOC101573127" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:101573127" CDS 189..2069 /gene="LOC101573127" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_023556807.1" /db_xref="GeneID:101573127" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 189..530 /gene="LOC101573127" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(324..326,369..371,411..413,423..425,477..479, 498..500,504..506) /gene="LOC101573127" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 663..1940 /gene="LOC101573127" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1074..1076,1086..1088,1122..1133,1140..1142, 1164..1166,1173..1175,1185..1187,1197..1199) /gene="LOC101573127" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1278..1280,1284..1286,1494..1496,1908..1910) /gene="LOC101573127" /note="active site" /db_xref="CDD:240015" ORIGIN
agcacttactcacctacgctgtctttctagccccatttattagggattacaaaaagagacctctggcagcagtgtggaaaatagatagaggagaaaaaactaatctgagaagccagttaggagacttttcaatcactagttcagtttctgccactgccttctacaaagcacaacctgtcattcagtttatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctaaaagttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacgagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccagactgttgagagaacagtagcacagtacttcagagaaaagtatactctccagctgaaatacccacaccttccctgtctgcaagtggggcaggaacagaagcatacctacctgccactagaagtctgtaatattgtggcagggcaacgatgcatcaaaaagctaacagacaatcagacttctactatgatcaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacggatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtcaccggacgcgtccttccagcacctatgctccagtatggaggacggaaccgaacagtagcaacaccaagccatggggtatgggacatgcgtggaaaacagttccacacaggagttgaaatcaaaatgtgggccattgcttgttttgccacacagagacagtgcagagaagaaatattaaaggggttcacggaccagctgcgtaaaatctccaaggatgcaggaatgcccatccagggccagccatgtttctgcaaatatgcacagggagcagacagtgtagagcccatgtttcggcatctcaagaacacatattctgggctacagctcattattgtcatcctgccagggaaaacaccagtatatgcagaggtaaaacgtgtaggagatacacttttgggtatggctacccagtgtgttcaagtcaagaatgtaataaaaacatctcctcaaactctctcaaatttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatatttttgggagcagatgtcactcatcctcctgctggtgatggaaagaagccctctatcgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtcagagttcagagacctcgacaggagatcatacaagatttggcctccatggtccgggaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttagacaggtattatattatgaactacttgcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtggttcagaagagacatcatactcgattattttgtgctgataggactgaaagggttggaagaagtggcaatattccagctggaacaacagttgatacggacattacacacccatatgagtttgatttttacctttgtagccatgctggaatacagggtaccagccgtccttcgcactatcatgttttatgggatgataattgctttactgcagatgaacttcaactgctaacttaccagctctgccacacttatgtacgctgtacacgatctgtttctatacctgcaccagcatattatgctcatctggtggcattcagagccagataccatcttgtggacaaagaacatgacagtgctgaaggaagccatgtttcaggacagagcaatgggcgagacccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaacaagtccaagtgtgttcttgaagggaagaactgagcgatgaatcaacatacagcatatgtctccagtagtccactgagtagatgtgtctccagccatacagaagccagcactgtgtgggagcccggtccttatgttgatgcaaggaagattgtttacttcatcaaggaacgcagcaccattatgcaatataaaaccagccagctgctttttgtgcggtctcctgtaggaagtatcgcagttgttttgttttctcttcttatagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaagtaaagcaaaagtaaatgatggtttaaaaaacatacacctacacaaataatcaaagtgaatattcacaattacgtgtgcaaaaaattaatgtgcattcatatattcttgtaaacggagtctgtttttaaatatatacatgcatatttcataggcatatatatctgagtctagatggataatagatatatatgtgtttatgtatatattttaggattcattccattggggaattttccttcccttttattctctgctcactaccaccttcatttctctctcaacctcccttgccctcatcttctatattcctaatgctgccagtgacattcaaatgttcatcgatgtggctcatttgaatgtgaagcgtggcaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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