2025-10-15 08:15:09, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_023428551 1613 bp mRNA linear VRT 26-DEC-2017 DEFINITION PREDICTED: Seriola lalandi dorsalis testis- and ovary-specific PAZ domain-containing protein 1-like (LOC111671461), mRNA. ACCESSION XM_023428551 VERSION XM_023428551.1 DBLINK BioProject: PRJNA423295 KEYWORDS RefSeq; includes ab initio. SOURCE Seriola lalandi dorsalis ORGANISM Seriola lalandi dorsalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019525432.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Seriola lalandi dorsalis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1613 /organism="Seriola lalandi dorsalis" /mol_type="mRNA" /isolate="HSWRI2012SDOR001" /sub_species="dorsalis" /db_xref="taxon:1841481" /chromosome="Unknown" /tissue_type="heart" /dev_stage="adult" /ecotype="SW California" gene 1..1613 /gene="LOC111671461" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111671461" CDS 114..1613 /gene="LOC111671461" /codon_start=1 /product="testis- and ovary-specific PAZ domain-containing protein 1-like" /protein_id="XP_023284319.1" /db_xref="GeneID:111671461" /translation="
MCRFQHVPVEGDEKFCVETVTRFIKNPMCIQKASAVFTGYYQNNPPGVYFSMPVLLTLLWALLKAGFVSDVFSVLGVSLSHKIVPSYEFLLALFNFVREKGLTGSVPELMQLTFKMVSAGLVLSLDCLDCVKNTPDFQQTVHSNSPGKHKLSTSPPFPEYLNLAQSIVEIELCTKQEDWRRMGKVFRSICQSSQHPNQVEQISGRIVIALLSESKDKLSLPFAAFAETVCQNEGEDNLIWSFLGRIGVSLMLRYYKTHQWAKGRRVVEVLSISKVNYSTLKGLFGNEDGASRCCLITVATELFLLSGSVEGALNTLQENKWFLSSCSWPCEPADLDSRSRVLMRLAEKTSHRDTLEVLCNLPGIKEPNDLVDISRYSPLFNSHLRVCVDRQILPVASDTVDFMLSQNVAVDHAVLQTLLHKLGKQNLWLRAREVFRHSLSVGYYPGVSAPPGFMALIVPWRLGEVELALAFEMFITVNATIILQLSETTTSCLSITLKR"
misc_feature 621..1139 /gene="LOC111671461" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:464250" ORIGIN
tgaacataagaaatgtgccgaggatcacaaacccggtgacagattttaggcgccagaaatctaattcttactgcagacagtacttcagtgaatcactgtcctgtggattcaagatgtgtcgattccagcatgtgcctgtggagggggatgagaagttctgtgttgaaactgtgacacggttcataaaaaatccaatgtgtatccagaaagcaagcgccgtgtttacagggtactaccagaacaacccaccaggagtgtatttctccatgccagtgcttctgacactcctctgggctctgctcaaagccggcttcgtgtccgatgtcttctcagtcctcggtgtcagcttgtcccacaagatagtgcccagctacgagttcctgctggccctctttaactttgtgagagagaagggtctcacaggctctgtacctgaactcatgcagctaacgttcaagatggtcagtgcgggtctggtgctgagtttggattgccttgactgtgtaaaaaacactcctgatttccagcagacggtccattcaaactcacctggcaaacacaagctatccaccagtcctccctttccagagtacctgaatttggcccaatccatcgtggaaatagagctttgtaccaagcaagaggactggaggcggatgggaaaggttttcaggtccatctgccaatccagccagcatcccaaccaagtggaacaaatcagcggccgcattgtcatcgcgctcctgtctgagagcaaggataaactctcactgccctttgctgcttttgccgagacagtgtgtcagaatgaaggtgaggacaacctgatctggagttttttaggcagaattggagtctcactcatgttgagatactacaaaacacatcaatgggccaagggtcggagggttgtagaggtgctgtccatttcaaaggtcaactactccacactcaagggtctgtttgggaatgaggatggagcttcacgttgctgcctgatcactgtagctaccgagctcttcctcctgagtggcagcgtggagggagccctgaacacactccaagaaaacaaatggttcctgagttcgtgctcatggccgtgtgagcctgcagatctggacagtcggagtcgtgtgttgatgcgtctggctgagaaaacctctcacagagacacgcttgaggtcctctgtaatctccctggaattaaagagccgaatgacttggttgacatctccagatacagtcctctgtttaactcccatctacgagtgtgtgtggacagacagatccttcctgtagcctcggatacagtggacttcatgctctctcaaaacgtggcagttgaccacgccgtgctgcagacacttttgcacaaactgggcaagcaaaacctctggctccgtgcacgggaagtctttagacactctctgagtgtggggtactacccaggtgtgtctgctccccctggtttcatggcactgatcgtcccttggcgactgggagaggtggagctggctctcgcctttgagatgttcatcactgtcaacgcaacaatcattctgcaactttcagaaaccaccacttcctgccttagcatcactctcaaaaggtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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