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2025-10-15 08:15:09, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XM_023428551            1613 bp    mRNA    linear   VRT 26-DEC-2017
DEFINITION  PREDICTED: Seriola lalandi dorsalis testis- and ovary-specific PAZ
            domain-containing protein 1-like (LOC111671461), mRNA.
ACCESSION   XM_023428551
VERSION     XM_023428551.1
DBLINK      BioProject: PRJNA423295
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Seriola lalandi dorsalis
  ORGANISM  Seriola lalandi dorsalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_019525432.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Seriola lalandi dorsalis Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1613
                     /organism="Seriola lalandi dorsalis"
                     /mol_type="mRNA"
                     /isolate="HSWRI2012SDOR001"
                     /sub_species="dorsalis"
                     /db_xref="taxon:1841481"
                     /chromosome="Unknown"
                     /tissue_type="heart"
                     /dev_stage="adult"
                     /ecotype="SW California"
     gene            1..1613
                     /gene="LOC111671461"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 97% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:111671461"
     CDS             114..1613
                     /gene="LOC111671461"
                     /codon_start=1
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1-like"
                     /protein_id="XP_023284319.1"
                     /db_xref="GeneID:111671461"
                     /translation="
MCRFQHVPVEGDEKFCVETVTRFIKNPMCIQKASAVFTGYYQNNPPGVYFSMPVLLTLLWALLKAGFVSDVFSVLGVSLSHKIVPSYEFLLALFNFVREKGLTGSVPELMQLTFKMVSAGLVLSLDCLDCVKNTPDFQQTVHSNSPGKHKLSTSPPFPEYLNLAQSIVEIELCTKQEDWRRMGKVFRSICQSSQHPNQVEQISGRIVIALLSESKDKLSLPFAAFAETVCQNEGEDNLIWSFLGRIGVSLMLRYYKTHQWAKGRRVVEVLSISKVNYSTLKGLFGNEDGASRCCLITVATELFLLSGSVEGALNTLQENKWFLSSCSWPCEPADLDSRSRVLMRLAEKTSHRDTLEVLCNLPGIKEPNDLVDISRYSPLFNSHLRVCVDRQILPVASDTVDFMLSQNVAVDHAVLQTLLHKLGKQNLWLRAREVFRHSLSVGYYPGVSAPPGFMALIVPWRLGEVELALAFEMFITVNATIILQLSETTTSCLSITLKR"
     misc_feature    621..1139
                     /gene="LOC111671461"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      
tgaacataagaaatgtgccgaggatcacaaacccggtgacagattttaggcgccagaaatctaattcttactgcagacagtacttcagtgaatcactgtcctgtggattcaagatgtgtcgattccagcatgtgcctgtggagggggatgagaagttctgtgttgaaactgtgacacggttcataaaaaatccaatgtgtatccagaaagcaagcgccgtgtttacagggtactaccagaacaacccaccaggagtgtatttctccatgccagtgcttctgacactcctctgggctctgctcaaagccggcttcgtgtccgatgtcttctcagtcctcggtgtcagcttgtcccacaagatagtgcccagctacgagttcctgctggccctctttaactttgtgagagagaagggtctcacaggctctgtacctgaactcatgcagctaacgttcaagatggtcagtgcgggtctggtgctgagtttggattgccttgactgtgtaaaaaacactcctgatttccagcagacggtccattcaaactcacctggcaaacacaagctatccaccagtcctccctttccagagtacctgaatttggcccaatccatcgtggaaatagagctttgtaccaagcaagaggactggaggcggatgggaaaggttttcaggtccatctgccaatccagccagcatcccaaccaagtggaacaaatcagcggccgcattgtcatcgcgctcctgtctgagagcaaggataaactctcactgccctttgctgcttttgccgagacagtgtgtcagaatgaaggtgaggacaacctgatctggagttttttaggcagaattggagtctcactcatgttgagatactacaaaacacatcaatgggccaagggtcggagggttgtagaggtgctgtccatttcaaaggtcaactactccacactcaagggtctgtttgggaatgaggatggagcttcacgttgctgcctgatcactgtagctaccgagctcttcctcctgagtggcagcgtggagggagccctgaacacactccaagaaaacaaatggttcctgagttcgtgctcatggccgtgtgagcctgcagatctggacagtcggagtcgtgtgttgatgcgtctggctgagaaaacctctcacagagacacgcttgaggtcctctgtaatctccctggaattaaagagccgaatgacttggttgacatctccagatacagtcctctgtttaactcccatctacgagtgtgtgtggacagacagatccttcctgtagcctcggatacagtggacttcatgctctctcaaaacgtggcagttgaccacgccgtgctgcagacacttttgcacaaactgggcaagcaaaacctctggctccgtgcacgggaagtctttagacactctctgagtgtggggtactacccaggtgtgtctgctccccctggtttcatggcactgatcgtcccttggcgactgggagaggtggagctggctctcgcctttgagatgttcatcactgtcaacgcaacaatcattctgcaactttcagaaaccaccacttcctgccttagcatcactctcaaaaggtaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]