2024-11-01 08:49:30, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_023331359 2735 bp mRNA linear VRT 22-DEC-2017 DEFINITION PREDICTED: Xiphophorus maculatus C-type lectin domain family 4 member M-like (LOC102236912), mRNA. ACCESSION XM_023331359 VERSION XM_023331359.1 DBLINK BioProject: PRJNA220265 KEYWORDS RefSeq. SOURCE Xiphophorus maculatus (southern platyfish) ORGANISM Xiphophorus maculatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036445.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xiphophorus maculatus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2735 /organism="Xiphophorus maculatus" /mol_type="mRNA" /strain="JP 163 A" /isolation_source="from the 114th generation of line-breeding" /db_xref="taxon:8083" /chromosome="3" /sex="male" /tissue_type="whole" /dev_stage="adult" gene 1..2735 /gene="LOC102236912" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:102236912" CDS 81..1271 /gene="LOC102236912" /codon_start=1 /product="C-type lectin domain family 4 member M-like" /protein_id="XP_023187127.1" /db_xref="GeneID:102236912" /translation="
MHVMTAKQQESIKNLTTERRQLIEERKMKENQIEEVIRDRHLSAVRAGLNPQRLTQEREELNKEREELRKKIDELSLEKEELSKKIDDLNNEKDELNKEKDELSKKTAELSSKTEELNKEKAELSKNTKDLNKKKLELNKEKDKLSEDKKEQSQEKEKLNKEKDELSKDKKELSNEKEKLNKEKDELSKEKKYLSTEKEELKKDKAELNKEREKLRVLTDEAENRCKNRDALKNFYDALMKFDNFPVHDLCPVWLRPKCHHCTKHEKSYKGHCYYIYPYDIGYANWDRSRQLCKIEGGDLVVIDDLEEQEFINNHTKQYDSDNHGYWIGLRHFRRNWSWVDGRRNFLEFWIKGIPHSSGAALHMPRKKATESWKAEDKLEAYKFICERLEISWPFS"
misc_feature 207..>722 /gene="LOC102236912" /note="Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown]; Region: CwlO1; COG3883" /db_xref="CDD:443091" misc_feature 864..1241 /gene="LOC102236912" /note="C-type lectin (CTL) or carbohydrate-recognition domain (CRD); Region: CLECT; smart00034" /db_xref="CDD:214480" misc_feature order(1161..1163,1167..1169,1176..1178,1194..1196, 1200..1211,1218..1226) /gene="LOC102236912" /note="ligand binding surface [chemical binding]; other site" /db_xref="CDD:153057" ORIGIN
catcagcactccagcacacttctctgttgttggtgtgttttgggttgctttgtgccatactgactgcaaaattcatctatatgcatgtgatgacagccaaacagcaggaaagtatcaaaaaccttacaacagaaagaagacaactgattgaggaacgaaagatgaaggagaaccagattgaggaggtgatccgagacagacacctgagcgcagtaagagcaggacttaacccacagaggcttactcaagagagagaggagctgaacaaagagagagaagagctgaggaaaaagattgacgagctgagcttagagaaagaagagctgagcaaaaagattgacgatctgaacaatgagaaagatgagctgaacaaagagaaagacgagctgagcaaaaaaacagcagagctgagcagcaagacagaggagctgaacaaagagaaagcagagctgagcaaaaacacaaaggatctgaacaaaaagaaactcgagcttaacaaagaaaaagacaagctgagtgaagacaaaaaggagcagagccaagaaaaagagaaactgaacaaagagaaagacgagctgagcaaagacaaaaaggagctgagcaacgagaaagagaaactgaacaaagagaaagacgagctgagcaaagagaaaaagtatctgagcacagagaaagaggagctgaagaaagataaagcagagctgaacaaagagagagagaagctgagagtattgacagacgaggcagagaaccgatgcaaaaacagagatgctctgaaaaacttttatgatgccctcatgaaatttgacaattttccagtacatgatttgtgcccagtatggttgagaccaaagtgccatcattgcacaaaacacgagaaatcctacaagggacactgctactatatttatccatatgacataggttatgcaaactgggaccgaagtcgacagttgtgtaagattgaaggtggagacttggttgtaattgatgatctggaggagcaggaatttatcaacaatcacaccaaacaatacgattctgataaccatggatactggatagggttacgtcattttcgacgcaattggtcctgggttgatggacgtaggaactttctcgagttctggattaaggggattccccattcttcaggagcagcactgcatatgccacgaaaaaaagccacagagagctggaaggcagaagacaaactggaagcatacaaattcatctgtgagcgtctggagatttcttggccctttagctaacactgttctcttaaagcttcaatgaggaacactcaactgtgtcatcaaattttggcgaatctcatgaataaaaaatcaatctctgaaagttaagttttaaattgcagttgctatagttcttctaacatggcaactgagattctgtccacagtcacttctgtaggtttgttttcatccacagaagcacttccccctctgagcggtccatttattgtccatttatctggttctcacactatgaggtccatttatctggttctcacactatgaggtccatttatctggttctcacactatgaggtccatttatctggttctcacactatgaggtccatttatctggttctcacactatgaggtccatttccgacactgttgattacctgcagtggttcctttgctttgggaaccttcgctccacaataagcaagccaacttccgcttcgatagtaggaacctttacatcttccagatgtggccagatgttaacatcctcctgcagggaatattctggtttttttagtacttaaattttataaatttttacagagcaatcacacagccataaatcagcaataattaacacaagtttttccatatgacaatatgtgaaataaattagttacacttttgcaggtaattaaacattttttaaaataggatgtgttaaagaaagaatagacagtcagtattctgactgattaattctgatgttcatttcactcctaaatatgattttattgctctctgttcttttctttttatatttaacaatcatgacatctgtctgagtgacgcggtggcacacaataactgaagccactctaagtataagctttatcaaaacccaaagttttattccaaatcataatgataatataataaaaaaaacacgttctcttattttttagtcttcacagagcaggaatttacttacatgtgaatattgtttttcacccaaccacaaagatgtgataaatatgtgatctgaatgtcttctagtttgtaatgtttacagattttctgcgtatgttcccataaatctgtcacattttgaagctcttgctgctttgtactaaagtggaaacgattgtaaatctgaagttaaatcagttatgattattttattcgtttggtgatttatagtttttaccgtaaagattactttagttttaccagttgtatttgtcagtttgagtcaggcagccaacgtggccacaagagggagccatacactgtctgctctttctgcagaccagtttttaagtagaagaagcttcgtctgccaaagatttattaaattcatctggatatataaaataactagacctgtttagttggtcttgtgtcatttttataaacttttattcgttacatctgtttcatttaatgtagaatttcacgatgcatttccgtttgatcgttttaaacagctttaggcctgaataaatttattatctttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]