2024-04-26 00:49:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_022757894 1843 bp mRNA linear VRT 04-OCT-2017 DEFINITION PREDICTED: Seriola dumerili vimentin (vim), mRNA. ACCESSION XM_022757894 VERSION XM_022757894.1 DBLINK BioProject: PRJNA412910 KEYWORDS RefSeq. SOURCE Seriola dumerili (greater amberjack) ORGANISM Seriola dumerili Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019174546.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Seriola dumerili Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1843 /organism="Seriola dumerili" /mol_type="mRNA" /isolate="Sdu_G_001" /db_xref="taxon:41447" /chromosome="Unknown" /country="Japan:Kochi, Yawata-gun" /collection_date="2014-06" gene 1..1843 /gene="vim" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:111230982" CDS 84..1451 /gene="vim" /codon_start=1 /product="vimentin" /protein_id="XP_022613615.1" /db_xref="GeneID:111230982" /translation="
MSYRSAPHSSYKKMFGGDRTAVRTNYSSRQYSSPVRSSRVSFGLSSAPTVYAVKTQRLRSTAAMPRLASENLDFSLSDAINSEFITNRTSEKAQMQSLNDRFANYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEMSQREEAEANMQSFRQDVDNAALARLDLERKVDSLQEEINFLKKLHDEEMLELQSQIQQQQHVQVDMEIAKPDLTAALRDVRLQYESLASKNIQESEEWYKSKFADLTEAAARNNDALRMAKQEANDYRRQVQALTCEVDALKGTNESMERQMREIEENFSLETGGYQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMIDSKPHVESTTTKKVLIKTIETRDGQVINESTQNHDDMD"
misc_feature 105..350 /gene="vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 351..1280 /gene="vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
gctgatgctgttgggacaagaagagagagaccaaatcggcgacattactcttgtggctgattgtctgaaaagataccagcaagatgtcttatagatcagctccacattcttcttataagaagatgtttggcggggacagaaccgcggtaaggaccaactactccagccgccagtactccagcccggtgcgctcctcccgggtatccttcggtctctcttcagccccgaccgtctacgctgtaaagacccagaggctccggagcaccgcagccatgccccggctggcctccgagaacttggacttctccttgtccgacgccataaacagcgagttcatcacgaaccgcaccagcgagaaagcgcagatgcagtcgctgaacgaccgcttcgccaactacatcgagaaggtgcgcttcttggagcagcagaacaagatcctgctggcggagctggagcagctgcggggcaaaggtacgtcccgggtcggggatctgtacgaggacgagatgcgggagctgagacgccaggtggaccagctcaccaacgagaaggcccgggtggaggttcaccgggataacctggcagacgacatcgacaggctgagagagaagttgcaggatgagatgtcccagcgggaggaggctgaggccaacatgcagagcttcagacaggatgtggacaatgctgccctcgcaagactggacctggagcggaaggtcgactcgctccaggaggaaatcaacttcctcaaaaagctgcatgatgaggaaatgctggagctgcagagtcagatccagcagcagcagcatgtgcaggtggatatggaaatagctaagccggacctgacagctgctctgagggacgtccgtctgcagtatgagagcctggcctccaaaaacatccaggagtctgaagaatggtacaaatccaagtttgctgacctcaccgaagctgcagccaggaataatgatgctttgaggatggctaagcaggaggccaatgactatagacgccaagttcaggcgcttacttgcgaggtggatgccctcaagggaactaatgagtcaatggagcgccagatgagagagattgaagagaacttctccttggagacgggaggctaccaggacactatcggccgtctcgaggaggacattcataacatgaaggacgagatggcccgtcacctccgagagtaccaagacctcttaaatgtcaagatggcccttgacatcgagatcgccacctataggaagctgctggaaggagaggagagcagaatctccaccccattgccaaacttctcatctctcaacctgagagaaacaatgattgattccaaacctcatgttgaaagcacaacaactaagaaggttctcatcaagaccattgagaccagggatggtcaggtgatcaacgagtcaacccagaaccacgatgacatggactaataatgtctttgtctttgccaaacaacaaacaaaaagcaatacgaagaaacacaattcactggagctacaagcaagcaaacaaaccaacaacacacaaaagcagacagcttcaaaaagtgcctttatatgtgatgatccagttagcctgttagttgacacagactgtattttgcttcctcctctgctgaaagtcttatcttttgtcacatttgtttagacacaataatgaattcagcacaacatagaattcctcactgaggtctacaaaaatctttctttgtagccaaagtagtatttttgattgatagagcatgcacactcatggaaatctgtatgctgaagatgtcacaattgcctgtacgcagcaataaacaattaagagtgaaactcaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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