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2024-03-29 21:56:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_022678716            1596 bp    mRNA    linear   VRT 21-JUL-2022
DEFINITION  PREDICTED: Astyanax mexicanus vimentin like (viml), mRNA.
ACCESSION   XM_022678716
VERSION     XM_022678716.2
DBLINK      BioProject: PRJNA853366
KEYWORDS    RefSeq.
SOURCE      Astyanax mexicanus (Mexican tetra)
  ORGANISM  Astyanax mexicanus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Characiformes; Characoidei; Characidae; Astyanax.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064411) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 21, 2022 this sequence version replaced XM_022678716.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: Astyanax mexicanus Annotation
                                           Release 103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Astyanax mexicanus"
                     /mol_type="mRNA"
                     /isolate="ESR-SI-001"
                     /db_xref="taxon:7994"
                     /chromosome="4"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="adult"
     gene            1..1596
                     /gene="viml"
                     /note="vimentin like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 96 Proteins"
                     /db_xref="GeneID:111194481"
     CDS             58..1386
                     /gene="viml"
                     /codon_start=1
                     /product="vimentin like"
                     /protein_id="XP_022534437.2"
                     /db_xref="GeneID:111194481"
                     /translation="
MSRRSYTMSYYRKHYGDERARVFSPALRSRTSSAPVLHSVTSYRARATAVPLSACAPAPDFSLTDAANAEFRVTRTNERAQLQSLNERFASYIEKVRTAEQRNRALTAELEQLRRGHGASRASEIFEEELRALRRQVDELTGEKARAEVTRDNLIQDIDKLRERLQEEILQREEAEGIMRSFRQDVDNAALARVDLERKVDSLLEEIAFLKKLHEEEMAELQAQVQQQQTHVDLEMAKPDLTAALRDVRLQYESLATKNIQESEEWYKSKFADLTEAANRNNEALRLAKQEANEYRRQVQALTCDVDSLKGTNESLERQMREMEDSFAVESSGYQNTITRLEEDIRNMKDEMAHHLRDYQDLLNVKMALDIEIATYRKLLEGEESRISMPLPNISTLNLRDAMLETRPTVETTTTKRVLIKTIETKDGQVINESTQNHEDLE"
     misc_feature    73..285
                     /gene="viml"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    286..1215
                     /gene="viml"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
actacccttcactgatctccagctttataaatcgcgagcggaccgacccgcggcaggatgtcccgccgctcctacaccatgtcctactaccgcaagcactacggcgacgagcgcgcgcgcgtcttctcccccgcgctgcgctcgcgcacctcctccgcgccggtcctgcactcggtgaccagctatagagcgcgcgcgaccgccgtgcccctgtcagcgtgcgcccccgccccggacttctccctcaccgacgccgcgaacgccgagtttcgcgtgacccgcacgaacgagcgcgcgcagctgcagtctctgaacgagcgcttcgcgagctacatcgagaaggtgcgcacggccgagcagcggaaccgcgcgctcaccgccgagctcgagcagctgcgccgcggacacggcgcctcgcgcgcctccgagatcttcgaggaggagctgcgcgcgctgcgcaggcaggtggacgagctgacaggtgagaaggcgcgcgccgaggtgaccagagacaacctgatccaggacatcgataaactgcgcgagagactgcaggaggagattctccaaagagaagaggctgagggcatcatgcggagcttcagacaggacgtggataatgctgctcttgcccgggtggatctggagaggaaagtggactctctgctggaggagattgccttcctgaagaagcttcatgaggaggagatggcagagctgcaggctcaggtccagcagcagcagactcacgtggatctggaaatggctaagcctgacctgaccgccgccctcagagacgtccggctgcagtacgagagcctggccaccaagaacatccaggagtctgaggagtggtacaagtcgaagtttgcagatctgactgaagccgccaacaggaataatgaagctcttcgattggccaagcaggaggccaatgagtaccgccggcaggttcaggctctgacctgtgacgtggactccctcaaggggacaaacgagtctctggagcgacagatgagggagatggaggatagctttgctgtcgagtcctcggggtaccagaacaccatcacccgtctggaggaggacatccgcaacatgaaggacgagatggcccatcacctgcgggactaccaggacctgctcaatgtaaagatggccctggacatcgagatcgccacctacaggaagctgctggaaggggaggagagcagaatctcaatgcctttgccaaacatctcaacccttaatttacgagatgccatgctggagaccagacccactgtagaaactacaacaaccaagagggtcctcatcaagaccatagagaccaaagatggccaggtaattaatgagtctacccagaaccacgaagacctggagtgaccagaaactggccccactggacattgcacctcggtcaaactcgcccagcaacaaacacacaacaccagccgcgtcacgctccctatagacctgcaggaacagctgctacccctcgctgaacatacaccactgctttacagtgcctttactgcatcacagagaacacccagatccactgcactggacagcaatagcaatatatacaagtac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]