2024-03-29 21:56:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_022678716 1596 bp mRNA linear VRT 21-JUL-2022 DEFINITION PREDICTED: Astyanax mexicanus vimentin like (viml), mRNA. ACCESSION XM_022678716 VERSION XM_022678716.2 DBLINK BioProject: PRJNA853366 KEYWORDS RefSeq. SOURCE Astyanax mexicanus (Mexican tetra) ORGANISM Astyanax mexicanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064411) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 21, 2022 this sequence version replaced XM_022678716.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Astyanax mexicanus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1596 /organism="Astyanax mexicanus" /mol_type="mRNA" /isolate="ESR-SI-001" /db_xref="taxon:7994" /chromosome="4" /sex="female" /tissue_type="muscle" /dev_stage="adult" gene 1..1596 /gene="viml" /note="vimentin like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96 Proteins" /db_xref="GeneID:111194481" CDS 58..1386 /gene="viml" /codon_start=1 /product="vimentin like" /protein_id="XP_022534437.2" /db_xref="GeneID:111194481" /translation="
MSRRSYTMSYYRKHYGDERARVFSPALRSRTSSAPVLHSVTSYRARATAVPLSACAPAPDFSLTDAANAEFRVTRTNERAQLQSLNERFASYIEKVRTAEQRNRALTAELEQLRRGHGASRASEIFEEELRALRRQVDELTGEKARAEVTRDNLIQDIDKLRERLQEEILQREEAEGIMRSFRQDVDNAALARVDLERKVDSLLEEIAFLKKLHEEEMAELQAQVQQQQTHVDLEMAKPDLTAALRDVRLQYESLATKNIQESEEWYKSKFADLTEAANRNNEALRLAKQEANEYRRQVQALTCDVDSLKGTNESLERQMREMEDSFAVESSGYQNTITRLEEDIRNMKDEMAHHLRDYQDLLNVKMALDIEIATYRKLLEGEESRISMPLPNISTLNLRDAMLETRPTVETTTTKRVLIKTIETKDGQVINESTQNHEDLE"
misc_feature 73..285 /gene="viml" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 286..1215 /gene="viml" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
actacccttcactgatctccagctttataaatcgcgagcggaccgacccgcggcaggatgtcccgccgctcctacaccatgtcctactaccgcaagcactacggcgacgagcgcgcgcgcgtcttctcccccgcgctgcgctcgcgcacctcctccgcgccggtcctgcactcggtgaccagctatagagcgcgcgcgaccgccgtgcccctgtcagcgtgcgcccccgccccggacttctccctcaccgacgccgcgaacgccgagtttcgcgtgacccgcacgaacgagcgcgcgcagctgcagtctctgaacgagcgcttcgcgagctacatcgagaaggtgcgcacggccgagcagcggaaccgcgcgctcaccgccgagctcgagcagctgcgccgcggacacggcgcctcgcgcgcctccgagatcttcgaggaggagctgcgcgcgctgcgcaggcaggtggacgagctgacaggtgagaaggcgcgcgccgaggtgaccagagacaacctgatccaggacatcgataaactgcgcgagagactgcaggaggagattctccaaagagaagaggctgagggcatcatgcggagcttcagacaggacgtggataatgctgctcttgcccgggtggatctggagaggaaagtggactctctgctggaggagattgccttcctgaagaagcttcatgaggaggagatggcagagctgcaggctcaggtccagcagcagcagactcacgtggatctggaaatggctaagcctgacctgaccgccgccctcagagacgtccggctgcagtacgagagcctggccaccaagaacatccaggagtctgaggagtggtacaagtcgaagtttgcagatctgactgaagccgccaacaggaataatgaagctcttcgattggccaagcaggaggccaatgagtaccgccggcaggttcaggctctgacctgtgacgtggactccctcaaggggacaaacgagtctctggagcgacagatgagggagatggaggatagctttgctgtcgagtcctcggggtaccagaacaccatcacccgtctggaggaggacatccgcaacatgaaggacgagatggcccatcacctgcgggactaccaggacctgctcaatgtaaagatggccctggacatcgagatcgccacctacaggaagctgctggaaggggaggagagcagaatctcaatgcctttgccaaacatctcaacccttaatttacgagatgccatgctggagaccagacccactgtagaaactacaacaaccaagagggtcctcatcaagaccatagagaccaaagatggccaggtaattaatgagtctacccagaaccacgaagacctggagtgaccagaaactggccccactggacattgcacctcggtcaaactcgcccagcaacaaacacacaacaccagccgcgtcacgctccctatagacctgcaggaacagctgctacccctcgctgaacatacaccactgctttacagtgcctttactgcatcacagagaacacccagatccactgcactggacagcaatagcaatatatacaagtac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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