2024-05-02 22:56:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021659924 7377 bp mRNA linear ROD 25-OCT-2023 DEFINITION PREDICTED: Meriones unguiculatus argonaute RISC component 1 (Ago1), transcript variant X2, mRNA. ACCESSION XM_021659924 VERSION XM_021659924.2 DBLINK BioProject: PRJNA1030069 KEYWORDS RefSeq. SOURCE Meriones unguiculatus (Mongolian gerbil) ORGANISM Meriones unguiculatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Gerbillinae; Meriones. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083351) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 25, 2023 this sequence version replaced XM_021659924.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030254825.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/23/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7377 /organism="Meriones unguiculatus" /mol_type="mRNA" /strain="TT.TT164.6M" /db_xref="taxon:10047" /chromosome="3" /sex="male" /tissue_type="liver, kidney, testi" /dev_stage="adult" /collection_date="2020-06-17" /collected_by="Tom Brekke" gene 1..7377 /gene="Ago1" /note="argonaute RISC component 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 47 Proteins" /db_xref="GeneID:110562993" CDS 229..2802 /gene="Ago1" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_021515599.1" /db_xref="GeneID:110562993" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 328..720 /gene="Ago1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 748..900 /gene="Ago1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 901..1263 /gene="Ago1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1057..1059,1102..1104,1144..1146,1156..1158, 1210..1212,1231..1233,1237..1239) /gene="Ago1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1396..2673 /gene="Ago1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1807..1809,1819..1821,1855..1866,1873..1875, 1897..1899,1906..1908,1918..1920,1930..1932) /gene="Ago1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2011..2013,2017..2019,2227..2229,2641..2643) /gene="Ago1" /note="active site" /db_xref="CDD:240015" polyA_site 7377 /gene="Ago1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cggtcgcgcctgcgcactggcagctactcgggcgctcgcagggggagctgctgcaggctccgcggcggcggcaacggaggctgcgggggcgacggcgctagcggccgggcttcggggggaagccgagcccggcccgggagcccgagcagtgcaagtgcgaggcacctaggcccctcacgctggactcctcagtctcccggacgcctgtcctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcaggcgcctacctgcctcccctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtgggcaaaccaatcaagcttctggccaattactttgaggtggacattcctaagattgatgtttaccattacgaggtggacatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaaacctcagatctttggggatcgcaagcctgtgtatgatggcaagaagaacatttacaccgtcacagcactgcccattggcaatgagagggttgactttgaggtgacaatccctggggaagggaaggataggatttttaaggtctccatcaagtggctcgccattgtgagctggcgcatgctgcatgaagccctggtcagtggccaaatccctgtgcccttggagtctgtgcaagctctggatgtggccatgaggcacctggcatctatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctctgccactgccttctacaaagcacagccagtgattgagttcatgtgtgaggtcctggacatcaggaacatagatgaacaacccaagcccctcacggactcccagcgtgttcgctttaccaaggagataaaaggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgcgtgtgtaacgttacccgccgccctgctagccatcagacgtttcccttgcagctggagagcggacagactgtggaatgcactgtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctacaagttgggcaagaacagaagcacacctatctgcccctcgaggtctgtaacattgtggctgggcagcggtgcattaagaagctgactgacaaccagacttcaaccatgataaaggctacagctaggtcggccccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttggaatcaaagtgaaggatgacatgacggaggtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgctacacccaaccaaggcgtctgggacatgcgtgggaagcaattctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccagaaacaatgtcgagaagaggtgctcaagaacttcacggaccagctgcggaagatttccaaggatgcagggatgcccattcaaggccagccatgtttctgcaaatatgcacagggggcagacagtgtggagcccatgttccggcatctaaagaacacctactcgggactgcagctcattatcgtcatcctgccggggaagacaccagtgtatgctgaagtgaaacgtgttggagatacactattgggaatggcaacgcagtgtgtgcaggtgaagaatgtggtcaagacctcacctcagactctgtccaacctctgcctcaagatcaatgtcaagctcggtggcattaacaacatcctcgtcccacaccagcgctctgctgtttttcagcagccagtgattttcctaggagcagatgttacacaccccccagctggggatgggaagaaaccgtctatcacagcagtggtgggcagtatggatgcacaccccagccggtactgtgctactgtgcgtgtgcagcgcccacggcaggagatcatcgaagacttgtcctatatggtgcgtgaactgctcatccagttctacaagtccactcgcttcaagcccacccgtatcatcttctaccgagatggggtacctgagggtcagctcccccagatccttcactatgagctgcttgccattcgagatgcctgcatcaaactggagaaagactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccgtttgagtttgacttctatctgtgcagccatgcgggcatccagggtaccagccgaccatcccattattatgtcctttgggatgacaaccgtttcacagcagatgaactccagattttgacataccagctgtgccacacttacgtacgatgcacacgttctgtctctatcccagcacctgcctactatgcccgcttggtggctttccgggcacgataccacctggtggacaaggagcatgatagtggagaggggagccacatctcggggcagagcaatgggcgagatccccaggccctcgccaaagctgtgcaggttcaccaggatactctacgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccctgggagctgtaccacccaaatccagaggaagcaaggaagagggaggtggggtcgggaggagtctaggaggccttgtttctatctacagaggggagataagggtgggaaaaggaccagcaagactgactaccagccagaaatctctgatagcaacctcatgtcctccacccctctccccatcttgtcacatctgaccccagtggaccaaaaggagcagcactagtgcccaccatacacacagttgtctcacgtgactcacagtgctaaagactcatgcttgacagctcactagggtcagctctgcagtcctgcggtcaaatgctggtatgcttgggtttgataattctagatgagaaagtgggtgggaggagggaaggaatttttaggagccttaatcagaaaaggtctagatttgtttaagaagaaaaatgaaaacagactcagatcaatattttagaatactagatgttttcatgggttcagaatccagtttgtaggaagatttttaatgctaatggtttgggttgctcctccccagctgccaccccctcccattatatgttttctaccccatacgtctcttccctgacagacatccagcccctagtaacacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttgtgggatggggtatgggtgggagatgagataggtagagagggaagagatatcccagcgccagcaagcctccagccagaatgccagctatttttcatttgaaggaattgacttcaatattcattgagcatttaaaaaaaaattacaacctcaagatggttaaaatccattgacatttgcactttcagacaagacaagtctccaagctgctgagatgactggcccttggcctttcccctttagcctcctcttttccctggccctataccccccaccctgtcaggtctagagttaccctcatagcatttctcattcttggcttcttttcccccagatggtcaagtctcttttgtttttaatatttcttaactggggtgtcttataacagaagatctttaggactaaaataagaaaacagaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggaagtccctcccatactggatgagtttgcatcccaggaacatggagctgtcagcaggaactgtggagctgactattctggcctggctatgtaggggtggttgtcccccaaggtagggatcagccgcagtcattccgctgtgcagataatacctttttcttgctacagcctccctctgctgccctgtcctgcactctttcttgtaagtgtgtcttccctttttctggactggactgtcctttgatcctttgactaaccgagattctagcatgtcttctggacaggctggagaattttgctgctcccttttgcttctgtttacacaaatgaatttttttctgtttcccactaaggcatgtgagtgggtggcataggctttttttctccccctctcaagatactggagttcagctgtcttgcaggactggaaaagaagtaggttctagctttgtccttgctgaccttaaagcaagggcccctcttcccttgactgttctctttttactcctgcattactgcttgggatggggagtttgaacttgggtgtacagatccctgtctaaggagcttgagcttagttttgttctgctctggtgatggagcaatgatattttacatctaggccaggcttagagggcagccggagaaaggaaggtccatatcctgggctgtggaatcaaaacctgtccctagcagccattggacagacccagatttgctatgcaaatagtccaggttcagttatggctggctacattgttcagtaacttcccaaaaggtagcacaaacattccttctggaaaaagcccaggactgttaagtagttcctcctgtactttttttctgctggctatagtatggagtgccccgtgggcacaagcccagccgaagaacagaacagagggctctgggaagaggcagctcactggagagcctacattccttacacaagtgcctaaacagagtgatgccaacactccatctgccctgtccatcgccttcatacacagtatacttcgtgttccgtcaccctttggggagggagctcttcgcacacagtgtgctgtcaacttgggtacatttggggccttggataagggcactattcctggagggtccagtcatttcaccagcatttgcagatgcccataaggaacaggtggctgtcataactcccagcaacaagtttttgttctctccttttttctttgcctcactctctctagttgtgtttcaagctagggattaaaaagcagtcttagtccattggtatttatgtgccattcaagaaataaaagcaaaagaatactgggggcatgatgtcccatgtctgtaattctataaaatctcagcactgaggctgaagcagatttacaagttcagggtccacctgggctgctcagtgaattccaggccattgtgtactacatagcaagaccacgtctcaaaaaaaaaggaagagcgagataaataacttgggtgatacagcttcctgctgtgattttaaaaaacaaacaaatcttttgagacttaactactactgaccaggtgggttcttcccatttaaagacggtacacacacattaaaagtggtgttgtcaagcttgtttggatttggtttaagtggtgcattgtaccgagctctgggaggattccaatctcatcttggacagatctctttctccttttccctcacccctactattctgctttccttttcctcttctcgctttccctggcttccttttccctcttcactcagcttgcttgctggctggcctgcctgcctgtctgcctgtgtgataatgaattctctgcatggctgcaatgatcccactgttagttggcaaggtcaggcttagttcattgactacagaagaccaaaaacctgtttcccatgcctagtggtgttaaccctggcttgcactgtcctcaagcttatactaggtcagagcagcaggcctgtctaactgacaaaatcagtagggtttctggcagtttcaacactttcatttggtggagctctttgctgagagtgccctagggtagccgggtagaggacagatatagaggaagagagtaaaaagaaaatggagagtttggataagatgtggtaaaggagaatgctgctttgtattcactccagtgtgacctattggttgaggtgctattgccagccacttgggataggcctggagctaccattactgggaacttgggatgcttggactatgaataaagctgaacaaagctaagtatgaaactactctaaaaatctggttctcaactgcaacatagctcttctttggcctcctctttggctaagcagcaatggttttggacagttttctttttaaccaggattatgtgaatgatgccagggacacagttttcttagctggcccatggaatgcctacaaggctgctcagtgttgtagacctggcatcaggcagcatgaaggaggatggagttactttccctttaaggtagaagagtcacctcttacctagccaaaaggcaatttggaaattcatgttggggaaaggttttgtttaatttactggactttagataacccaggatggtcgttaagatgctttccttgagcagggatcatggcagggatatgcaaggcactcttctactcggccttctaagcagactgggaaagggggattctctggtttttctctttcttcccacttactcggacttgccttctccctgagccacgagagaggctgggttggtgctctccccttactctgctcctactgacttagaacctctggctgctgtatgatagcccaggaaagggaatggaaagaatgggctcaaaacaaaacagaacaatgtaaggaaggcagatttccttccttaaaaagggaaatcagaaactctgcaagaattgtgtgagtaaagacaatgtgtctgaatgcactgagtcctctggtgtcatagcaataaggaaaaatgaaatgacttcctgtgcacacagtccaacctgattgctgtatgatgttgcacttagcagccatgtggtgggcatgtgtgactactctgggtttcactttattttctaaactttttattcctctcaagtccagcatggatggggaaatgtccctgaagccccgcagctgtgtacttgtttgcatttgtttcccattgagacttgtgtttgtgtcctgctttgagctgtaccctgtcccgtccattgtgaaattatcccagcagctgtaatgtacagttccttctcaagcaagcaacagcagcacaatcctgtgttttataaagacaacagtggcatttatttctaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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