GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-07-15 21:01:48, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_020265616            3075 bp    mRNA    linear   PLN 28-AUG-2017
DEFINITION  Talaromyces atroroseus Pro-apoptotic serine protease nma111
            (UA08_03328), partial mRNA.
ACCESSION   XM_020265616
VERSION     XM_020265616.1
DBLINK      BioProject: PRJNA374571
            BioSample: SAMN03339010
KEYWORDS    RefSeq.
SOURCE      Talaromyces atroroseus
  ORGANISM  Talaromyces atroroseus
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae;
            Talaromyces; Talaromyces sect. Trachyspermi.
REFERENCE   1  (bases 1 to 3075)
  AUTHORS   Rasmussen,K.B., Rasmussen,S., Petersen,B., Sicheritz-Ponten,T.,
            Mortensen,U.H. and Thrane,U.
  TITLE     Talaromyces atroroseus IBT 11181 draft genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3075)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3075)
  AUTHORS   Rasmussen,K.B., Rasmussen,S., Petersen,B., Sicheritz-Ponten,T.,
            Mortensen,U.H. and Thrane,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2015) DTU Systems Biology, Technical University
            of Denmark, Soeltofts Plads 223, Kgs. Lyngby 2800, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_017971435).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3075
                     /organism="Talaromyces atroroseus"
                     /mol_type="mRNA"
                     /strain="IBT 11181"
                     /isolation_source="plant fruit food product"
                     /host="Capsicum annuum"
                     /db_xref="taxon:1441469"
                     /chromosome="Unknown"
                     /geo_loc_name="Denmark"
                     /lat_lon="55.77198 N 12.50519 E"
                     /collection_date="17-Dec-1990"
     gene            <1..>3075
                     /locus_tag="UA08_03328"
                     /db_xref="GeneID:31003083"
     CDS             1..3075
                     /locus_tag="UA08_03328"
                     /note="GO_component: GO:0005634 - nucleus; GO_function:
                     GO:0004252 - serine-type endopeptidase activity;
                     GO_function: GO:0005515 - protein binding; GO_process:
                     GO:0006508 - proteolysis; GO_process: GO:0006915 -
                     apoptotic process"
                     /codon_start=1
                     /product="Pro-apoptotic serine protease nma111"
                     /protein_id="XP_020121228.1"
                     /db_xref="GeneID:31003083"
                     /db_xref="InterPro:IPR001478"
                     /db_xref="InterPro:IPR001940"
                     /db_xref="InterPro:IPR009003"
                     /db_xref="InterPro:IPR025926"
                     /translation="
MTGEARPKRKHSPVPASDRPAKHLKPESTVLTPGDETPANGTVYDVENDEDITPIVALGATQADSPEWQATIESVVKSVVSIHFCQTCSFDTDLSMCSQATGFVVDAKRGYILTNRHVVCAGPFWGYCIFDNHEECDVRPVYRDPVHDFGILKFDPKAIKYMDMTELKLNPEGAQVGVEIRVVGNDAGEKLSILSGVISRLDRNAPEYGEGYSDFNTNYIQAAAAASGGSSGSPVVNIAGHVVALQAGGRADGAATDYFLPLGRPLRALQCIQEEKPVTRGTIQTQWMIKPFDECRRLGLTPEWEASVRKTAPKETGMLVAEIVLPEGPADGKLQEGDVLLKVNGELLTQFVRLDDILDSNVGKSIHLLIQRGGEDLELECSVGDLHAITPDRFVSVAGGTFHDLSYQQARLYAIATRGVYVCEAAGSFKIENTLSGWIIDSVDKRPTRNLQEFIEVMKTIPDRSKIVISYRHIRDLHTRGTSIIYLDRHWHPKMSLAVRNDKTGLWDFSDIAEPLPAEPPVPRKADFIQLDGVSQTAAADIVRSFVRVSCTMPLKLDGFPQGKKTGYGLVIDAEKGLVVVSRAIVPYDLCDINITVADSIIVTGKVIFMHPLQNYTIVQYDPSLVQAPVKSARLSTENIKQGQDTIFVGFNQNLRIVVAKTTVTDITTVAIPANASAPRYRAINLDAITVDTGLSSQCTNGVLLRDDGVVQALWLNYLGERTPSSHKDVEYHLGLATPSLLPIISKIQGGEIPKLRILDMESYVIQMSQARIMGVSEKWIEQVAAANPSRHQLFMVRKLDSPPPSFTHHETDSLKEGDIILTLNGKLITRVSEFDVMYDNEVLDALIVRNGQEMHVKLRTVPTEDLETDRAVMFCGAVLQKPHHAVRQQISKLHSEIYISARSRGSPAYQYGLSPTNFITAVNGVQTRDLDSFVREVKKIPDNTYFRLRAVTFDNVPWVVTMKKNDHYFSMSEYVKDPSVPAGWKVVSYPKKDEASADTSNLTADAMDEGTEGGGSDAEPDQD"
     misc_feature    292..1158
                     /locus_tag="UA08_03328"
                     /note="Periplasmic serine protease, S1-C subfamily,
                     contain C-terminal PDZ domain [Posttranslational
                     modification, protein turnover, chaperones]; Region: DegQ;
                     COG0265"
                     /db_xref="CDD:440035"
     misc_feature    883..1149
                     /locus_tag="UA08_03328"
                     /note="circularly permuted first PDZ domain (PDZ1) of
                     Saccharomyces cerevisiae pro-apoptotic serine protease
                     Nma111p and related domains; Region: cpPDZ1_ScNma111-like;
                     cd06786"
                     /db_xref="CDD:467625"
     misc_feature    order(889..912,961..963,970..972,1060..1065,1072..1074)
                     /locus_tag="UA08_03328"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467625"
     misc_feature    1162..1392
                     /locus_tag="UA08_03328"
                     /note="PDZ-like domain; Region: PDZ_1; pfam12812"
                     /db_xref="CDD:372324"
     misc_feature    2311..2577
                     /locus_tag="UA08_03328"
                     /note="permuted PDZ domain of Deg/high-temperature
                     requirement factor A (HtrA) family of housekeeping serine
                     proteases and related domains; Region:
                     cpPDZ_Deg_HtrA-like; cl49614"
                     /db_xref="CDD:483954"
     misc_feature    order(2317..2340,2383..2385,2392..2394,2503..2508,
                     2515..2517)
                     /locus_tag="UA08_03328"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467627"
     misc_feature    2611..2850
                     /locus_tag="UA08_03328"
                     /note="second and fourth PDZ domains (PDZ2 and 4) of
                     Saccharomyces cerevisiae pro-apoptotic serine protease
                     Nma111p and related domains; Region: PDZ2-4_Nma111p-like;
                     cd06719"
                     /db_xref="CDD:467617"
ORIGIN      
atgaccggcgaagctcgccccaagcgcaaacatagcccggtgcctgcgtccgacaggcctgcgaaacacctgaagcctgaatccactgttcttacgcccggggatgaaacacctgcgaatggcaccgtatatgacgtggagaatgatgaagacatcacaccgatcgttgcgttgggggcaactcaggcggactcgccggagtggcaagcgactattgagtcagtggtgaagagtgtcgtctcgatccatttctgtcagacatgctcattcgacaccgacctgtccatgtgtagccaggcaacagggttcgttgtggacgccaagagaggctacattctcacaaacagacatgttgtctgtgccggcccgttctggggttattgcattttcgacaatcatgaggagtgcgatgttcgtcccgtttatcgggatcctgtccacgactttggcattctgaaattcgaccccaaggcaatcaaatacatggatatgacagagctaaagttgaatccggagggggcacaagtgggggttgagatcagggtggtcggtaacgatgccggagagaagctaagtattctctctggtgtcatcagtcgccttgaccgtaacgctcctgagtacggcgaaggctacagcgacttcaacacaaattacatacaagcggctgctgccgccagcggcggaagctctggtagtcctgtcgtcaatatcgccgggcatgtcgtcgctctacaggccggtggtcgtgcggatggtgctgctacagattactttctcccactgggccgtccactacgcgcactccagtgcatacaggaagagaaacctgtcacgcgaggcaccattcaaacacaatggatgattaaaccttttgatgaatgtcgacgtcttggactgaccccggagtgggaggcctctgtccgcaaaaccgcgcctaaggagacaggaatgttggtggcggaaattgttcttcccgagggcccggctgatgggaagcttcaagagggagatgtacttctcaaggtgaatggagagctgctcactcagtttgtgcgacttgatgatatactggattccaatgtcggcaaatctatccaccttcttatacagcgcggcggcgaggacctcgaattggaatgcagcgttggagacctacacgctatcacaccagatcgcttcgtcagcgtcgctggtggtacattccatgatctttcttaccagcaagcgcggctttatgctatcgccactcgtggcgtctacgtttgtgaggcagcaggatccttcaagattgaaaacactctgtcggggtggatcattgattcggtagacaagcggcctactcgaaacttgcaagagtttattgaggttatgaagacaataccagatcgctcgaaaattgttatttcttatagacatattcgagatctccatacacgaggcacaagcattatctacctcgatcgtcactggcatccaaagatgtcccttgcagtccgtaacgacaagaccggcttgtgggacttttcagatatcgccgaacctctacccgctgagccaccagttcctcgaaaagcggattttattcagttggacggggtcagtcagaccgctgccgctgatatcgttcgcagtttcgtccgggtgtcatgcaccatgccgctgaagctggatggattccctcagggcaaaaaaaccggatacggtttagtcattgatgcggagaagggccttgtcgttgtttctcgggctattgttccgtacgatctgtgtgatatcaatatcacagttgcagattcgattatcgtcactggcaaagtgattttcatgcatcctctgcaaaactataccattgtgcaatacgatccaagtctcgtccaggctccagtaaaaagtgcgcggctaagcacggaaaacatcaaacaaggtcaagacacaatatttgtcggattcaatcaaaatctgcgcattgttgtcgctaaaacaacagtcactgacatcaccaccgttgctatccccgccaacgcctctgctccacgttaccgggctatcaatcttgacgctatcacagtggacacggggctcagcagccagtgcactaacggtgtcttgctgagggatgacggcgttgtccaggctctttggctaaactatctaggagaacgaacgccaagctcgcataaagacgtcgagtatcatcttgggctcgcaacgccttctcttctacccataattagcaagatccaaggaggcgaaatcccaaagttgcgtatcttggatatggaaagctatgtcattcaaatgagtcaagctcgaataatgggcgtatcggagaagtggatcgagcaagtagcagcagccaacccttcccgacatcaattgttcatggtcagaaaactggacagccctcctccatctttcacgcatcatgagacagattccttgaaggagggagacatcattctcacactaaatggaaagcttattacgcgagtctccgagttcgacgttatgtacgacaacgaagttctcgacgcgttgatcgtccgaaacggacaggaaatgcacgtcaagttgcgtacggtgccaacggaagatttggagaccgatcgagcagtcatgttttgcggagctgtgttgcagaagccacatcacgctgtgcggcaacagatttcgaagcttcacagtgagatttacatcagtgctaggagtcgtggctcacctgcctaccagtatggattgtctccgacaaatttcatcacagcagtgaacggagtgcaaacccgcgatctcgacagctttgtccgcgaggtgaaaaagatcccggataacacatacttccgtcttcgggcggtcacattcgacaatgtaccgtgggttgtcacgatgaaaaagaatgatcactacttctccatgtcggaatatgtcaaagacccctcagtcccggctgggtggaaggtggtctcttatccgaaaaaagacgaagcttcggcggatacatccaacctgacagcagatgcgatggacgaaggaacagaaggtggcggaagtgatgcagagcctgatcaggattag
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]