2024-03-30 00:49:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_020212990 438 bp mRNA linear PLN 15-FEB-2017 DEFINITION Cyberlindnera jadinii NRRL Y-1542 ribosomal protein S12/S23 partial mRNA. ACCESSION XM_020212990 VERSION XM_020212990.1 DBLINK BioProject: PRJNA374042 BioSample: SAMN02616005 KEYWORDS RefSeq. SOURCE Cyberlindnera jadinii NRRL Y-1542 (Candida utilis NRRL Y-1542) ORGANISM Cyberlindnera jadinii NRRL Y-1542 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Cyberlindnera. REFERENCE 1 (bases 1 to 438) AUTHORS Riley,R., Haridas,S., Wolfe,K.H., Lopes,M.R., Hittinger,C.T., Goker,M., Salamov,A.A., Wisecaver,J.H., Long,T.M., Calvey,C.H., Aerts,A.L., Barry,K.W., Choi,C., Clum,A., Coughlan,A.Y., Deshpande,S., Douglass,A.P., Hanson,S.J., Klenk,H.P., LaButti,K.M., Lapidus,A., Lindquist,E.A., Lipzen,A.M., Meier-Kolthoff,J.P., Ohm,R.A., Otillar,R.P., Pangilinan,J.L., Peng,Y., Rokas,A., Rosa,C.A., Scheuner,C., Sibirny,A.A., Slot,J.C., Stielow,J.B., Sun,H., Kurtzman,C.P., Blackwell,M., Grigoriev,I.V. and Jeffries,T.W. TITLE Comparative genomics of biotechnologically important yeasts JOURNAL Proc. Natl. Acad. Sci. U.S.A. 113 (35), 9882-9887 (2016) PUBMED 27535936 REFERENCE 2 (bases 1 to 438) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-FEB-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 438) AUTHORS Riley,R., Haridas,S., Wolfe,K.H., Lopes,M.R., Hittinger,C.T., Goker,M., Salamov,A., Wisecaver,J., Long,T.M., Aerts,A.L., Barry,K., Choi,C., Clum,A., Coughlan,A.Y., Deshpande,S., Douglass,A.P., Hanson,S.J., Klenk,H.-P., Labutti,K., Lapidus,A., Lindquist,E., Lipzen,A., Meier-Kolthoff,J.P., Ohm,R.A., Otillar,R.P., Pangilinan,J., Peng,Y., Rokas,A., Rosa,C.A., Scheuner,C., Sibirny,A.A., Slot,J.C., Stielow,J.B., Sun,H., Kurtzman,C.P., Blackwell,M., Jeffries,T.W., Grigoriev,I.V., Nordberg,H.P., Cantor,M.N. and Hua,S.X. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (23-FEB-2016) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_017963667). ##Metadata-START## Organism Display Name :: Cyberlindnera jadinii NRRL Y-1542 GOLD Stamp ID :: Gp0009554 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..438 /organism="Cyberlindnera jadinii NRRL Y-1542" /mol_type="mRNA" /strain="NRRL Y-1542" /type_material="type material of Saccharomyces jadinii" /db_xref="taxon:983966" /chromosome="Unknown" gene <1..>438 /locus_tag="CYBJADRAFT_131431" /db_xref="GeneID:30987386" CDS 1..438 /locus_tag="CYBJADRAFT_131431" /codon_start=1 /product="ribosomal protein S12/S23" /protein_id="XP_020068523.1" /db_xref="GeneID:30987386" /db_xref="InterPro:IPR006032" /db_xref="JGIDB:Cybja1_131431" /translation="
MGKGKPRGLNSARKLRVHRRNNRWAEQSYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKRVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS"
misc_feature 10..435 /locus_tag="CYBJADRAFT_131431" /note="40S ribosomal S23; Provisional; Region: PTZ00067" /db_xref="CDD:185422" misc_feature order(82..84,88..102,106..108,112..129,133..153,184..210, 226..234,256..258,262..273,310..330,337..348,364..369, 382..384,388..390,418..426) /locus_tag="CYBJADRAFT_131431" /note="18S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:239465" misc_feature order(184..189,340..342) /locus_tag="CYBJADRAFT_131431" /note="streptomycin interaction site [chemical binding]; other site" /db_xref="CDD:239465" misc_feature 187..192 /locus_tag="CYBJADRAFT_131431" /note="28S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:239465" misc_feature order(190..207,268..294) /locus_tag="CYBJADRAFT_131431" /note="aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site" /db_xref="CDD:239465" misc_feature 295..297 /locus_tag="CYBJADRAFT_131431" /note="eEF2 interaction site [polypeptide binding]; other site" /db_xref="CDD:239465" ORIGIN
atgggtaagggtaagccaagaggtttgaactccgctagaaagttgagagtccacagaagaaacaaccgttgggctgaacaatcttacaagaagagattgttgggaactgctttcaagtcctctccattcggtggttcttctcacgctaagggtatcgtcttggaaaagattggtattgagtccaagcaaccaaactctgctatcagaaagtgtgtcagagttcaattgatcaagaacggtaagagagttactgctttcgttccaaacgatggttgtttgaacttcgtcgatgagaacgatgaagttttgcttgctggtttcggtagaaagggtaaggctaagggtgatatcccaggtgtcagattcaaagtcgtcaaggtttctggtgtctccttgttggccttgtggaaggagaagaaggagaaaccaagatcatga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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