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2024-03-29 01:36:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_020185626            1944 bp    mRNA    linear   ROD 15-FEB-2017
DEFINITION  PREDICTED: Castor canadensis vimentin (Vim), mRNA.
ACCESSION   XM_020185626
VERSION     XM_020185626.1
DBLINK      BioProject: PRJNA371604
KEYWORDS    RefSeq.
SOURCE      Castor canadensis (American beaver)
  ORGANISM  Castor canadensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Castorimorpha; Castoridae; Castor.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_017872845.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Castor canadensis Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1944
                     /organism="Castor canadensis"
                     /mol_type="mRNA"
                     /isolate="Ward"
                     /db_xref="taxon:51338"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="Leukocyte"
                     /dev_stage="adult"
     gene            1..1944
                     /gene="Vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 58 mRNAs, 47 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:109700441"
     CDS             220..1623
                     /gene="Vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_020041215.1"
                     /db_xref="GeneID:109700441"
                     /translation="
MSTRSVSSSSYRRMFGGPGTGSRPSSSRSYVTTSTRSYSLGSSLRPSTSRSLYASSPGGGYVSRSSAVRLRSSAVPGLRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     misc_feature    280..525
                     /gene="Vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    526..1452
                     /gene="Vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
ggcacaatccacggctgggatggcagtgggaggggaccctctttcctaatggggttataaaaacagcgcctttggcggggtcccgtcctctgctactcttgctccggggtccccgcaccagagacgcagcagcgctcccacctcccactcgctcgcctctcctgtctaagccagtccgtgcagccgcacccacccagcccatcgcctccctccgcagccatgtccaccaggtccgtatcctcgtcctcctaccgtaggatgttcggtggccccggtaccgggagccggccgagctccagccggagctacgtgaccacgtccacccgctcctacagcctgggcagctcgctgcgccccagcaccagccgaagcctctatgcttcgtccccgggtggcggctatgtttcccggtcctctgccgtgcgcctgcggagcagcgcagtgcccggcttgcggctgctgcaggactcggtggacttctcgctggccgatgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaatgatcgcttcgccaactatatcgacaaggtgcgcttcctggagcagcagaacaagattctgctggccgagctcgaacagctcaagggccagggcaagtcgcgcctgggggacctgtacgaggaggagatgcgggagttgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaagtggagcgcgacaacctggcggaggacatcatgcggctccgcgagaaattgcaggaggagatgcttcagagagaggaagccgagagcaccctgcaatctttcagacaggatgttgacaatgcttccctggcacgtcttgaccttgaacgcaaagtggaatccttgcaagaagagattgcctttttgaagaaactgcatgatgaggaaatccaggagctgcaggcccagattcaggaacagcatgttcaaatcgatgtggatgtctccaagcccgacctcacggctgccctgcgtgatgtccgtcagcaatatgaaagtgtggctgccaagaaccttcaggaggcagaagaatggtacaagtccaagtttgctgacctctccgaggctgctaaccggaacaatgatgccctgcgccaggcgaagcaggagtcaaatgagtaccgaagacaggtgcaatccctcacctgtgaagtggatgctcttaaaggaactaatgagtctctggaacgccagatgcgtgaaatggaagagaacttttctgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggctcgtcaccttcgtgaataccaagacctgctcaatgttaagatggctcttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcctctctgaacctgagagaaactaatctggattcactccctctggttgacacccactcaaaaaggactcttctgattaagacggttgaaaccagagatggacaggttatcaatgaaacttcccagcatcatgatgaccttgaataagaactgcacgccttcagtgcagcaatatattaccagcaagaataaaaaagaaacccatatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataagctctagttcttaacaaccgacactcctaaaagttttagaaaaagaagtttacaacataatctagtttacaaagaagtcttgtgctagaatacttttttaaaagtatttttgaataccattaaaactgcttttttccagcaagtatctgaccaacttgtttctgcttcaataaatctttggaaaaactc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]