LOCUS       XM_017814886            9593 bp    mRNA    linear   VRT 11-AUG-2016
DEFINITION  PREDICTED: Lepidothrix coronata lymphocyte activating 3 (LAG3),
            transcript variant X3, mRNA.
ACCESSION   XM_017814886
VERSION     XM_017814886.1
DBLINK      BioProject: PRJNA338288
KEYWORDS    RefSeq.
SOURCE      Lepidothrix coronata (blue-crowned manakin)
  ORGANISM  Lepidothrix coronata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Pipridae; Lepidothrix.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_016690226.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Lepidothrix coronata Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9593
                     /organism="Lepidothrix coronata"
                     /mol_type="mRNA"
                     /isolate="B3197"
                     /specimen_voucher="LSUMZ:110521"
                     /db_xref="taxon:321398"
                     /chromosome="Unknown"
                     /sex="male"
                     /dev_stage="adult"
                     /geo_loc_name="Peru: Loreto Department, 1.5 km S Libertad,
                     S. bank Rio Napo, 80 km N Iquitos"
     gene            1..9593
                     /gene="LAG3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:108497339"
     CDS             7667..9085
                     /gene="LAG3"
                     /codon_start=1
                     /product="lymphocyte activation gene 3 protein isoform X2"
                     /protein_id="XP_017670375.1"
                     /db_xref="GeneID:108497339"
                     /translation="

MQHPHSLLNSLSCYSWSHPSRISGGGKQGPENVGQRGEFSCAALPLEPQKNEKELEAAARQDICAVEEAWGKDSALHNGNFSLRIDPVRSEDAGLYEARVEYNSEVHSCHVELGVITVTLSPPNPVEENEPLLMSCNSSYQASLVEICWFHNGHLGPTSRTFCSLSGALSILRPAMSDAGSWRCQLRYSDNEIISATYNLQILGFDGPTNPVVYAAAGSAAHLPCSLSYLPSSFQMNMVTAHWSHLAGGHLQDWDIFPNLSNRSFPLHLPVVGPRDAGQYRCAVSVGHKTISREVTLAVVTVTPSIQGPVSEGSRLLLICSLTHSRGHERFQWKHLGSVPTKSKLAVATLQNLEGSSAQMGPILKIPKVSQKDTGTWECSVYGPEGQLGGVEYKLQITSAQVSSPPAMFSGQVTFGLTLTLFLLLAVCVVALALQKRAQTPAFSALEGMIGVPGPRKSMKENQKGKIQQTEC"

     misc_feature    <7898..8005
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    8018..8233
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    8060..8074
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8102..8116
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    8147..8179
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    8207..8224
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    8297..8563
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    8327..8341
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8384..8398
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    8501..8518
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    8567..8857
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    8612..8626
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    8654..8668
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    8750..8764
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    8792..8809
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    8834..8845
                     /gene="LAG3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
ORIGIN      

catgggaagaaaacatcaaagatggattgtaagagcataaaaatggtcgtaccaatggtctctctatggtgctctgctatggccaatacaagatccctaaggaaaggcattgagaatcaaggcatcatgtagaagcttcctgcaagcaagagtcaaggacagcctgagctggcagtcataccagttcatcacattcaaaagccagtgaggaactgatcctccacaaattacctaatctgtatttgaactcatttatattcctgctctccataacatcctaacatcctctaacaataattacactgtctttgggacatgcaaaatgaatttcctcttgtttgcagtaaaattgctgcctgagctcaccactgtttccttcagattaggtaaaagagatcaagcatctcaagtttattcatttcaaagcaagatcttcaggctcccaagtcagagttggtttggttttatttttgtaccactctgctaaatccttttcccacatccattttcaatatatggacacattccagtaacttgtgctgtaaacagaggtaacgcaatctgttcactccgtgagatcccatttaatacagcatgcatcatctatctccctccctggagccttgtcttcccaggatactgtattatgttgcggaagtgtgattccacatactttgttcctccatgtagaaccttatgttttaattctaagcgtgattttaccaggggttttaggaggtagttacttcccattaactcggccaaatatatgcaccgtgccaggagagacagtcacacctgcagagctgtgtagccctcctaaccatattttgtcattgtaagacatccatgaacatcagaaagcatttagatgttgagcagatcatgtgacagcctagcactggaagctcacatagtctgaatttctaggacactttcatctcatcagcaaagcgtctgaagtatttacgcaggacacaaaagcattagctgctttatcttctactctcacacatgctgtgcagctaaagagagtcctttggtcttttgtggctttctgagaaaaacctggcagagaagcctgtaagagtggagagagctctgtgcagcatgaaatgttcaccttctgtagaatgggacctgacacctgcaaacagaaacttcttagcaccagagaaaattatcaatggcaccaaacaaacaaaaaaaatcaagcttaaacccatgttttctgcatgtgacctcaattgcaccacagtgaccagctcccggcagaacctcctaatatttagttgtctctccgtcttgggaaaccagacctctcccagccctccttgtgacacaggaggtcccaccccttcttgggaattttgaagtccatttatagttccatctctttggtcccagcctcctttgagggtaaggaagatttagatcttacaccaagaaagcatgctgtgtgtgccagcacagtgagaatgggggtagctccagagccagaggggtctctttgcagtactaaaggcaagaacacagcaagcagtgattatccattattggaagtgttcaggattttcctgaacctggccctgagcaaccctgtctagtttgagagtcactctgctgggagcagaggggtgaaatagagaccccagaggtcctttcccacctgaatcttcctgtgatactgtgactaacaaacaagtgggtttatttgatttcgtggtgtttttcttagtgaggcagtagaagatatcttacaaaaggatgcaggctgctacctgccatgaggtgccaagtggagaggaaattgaaaaaacagctcagttgccactacattctgaattgcagtctggcacacaatcgtgttaatccagcacaaatgcatagtgttgcagagaggggcaatcccatcttccctttcatctctcctgctgcctctcttttgtcaacactgatgagcagcagagaattgatccagctgaaaactaaactataaaggaataaatccattttgatttacaatgagccctttcagtttaaaaatgcaccatctccctccctagcaattttttgttcaaagtaaagtggttggggatcaccaaatcagagacttcattctcttcaggactattctggagcactgctgtgcccctccttgctatgccatcatccacagcaactttcccagtgattatattcttctgcaaatgatttttcgtagcatcactgctcctttagtcaccctctactttttcgtatctagctttcccactaagaaagaaacaacatattctctatttagcctgcagcctccagggttccaatgtaccatgagatatgggctcctgttctcctgccatgatgcaccatgaaaacacagcatgtggatcagacccactttttcacagttcctggggcacaggcaaatacgcctagagccagacccctctgtgctctgagcaatgctcatcctccagcatctgaaacatgacaaggtgcctcttctctgttggagaaacccaggttactgcccagagtagaacacagagaggatttgagccccatgagcagaaggcacatccttctgtggcagtttttctctgaagggatactgtactgtcagttgagagcaacagcagcaataaggatatgagcctggaatatgtggattggcctttctctcttttatggcactttcagagattttgtttgcttgatatttctgctaatgctcatctgctttctgggctatccctggtgtccagcacttgtatgtcatccagctctgctgtgggcactggaacttccagtccactgggtcccaaggaccctgcagatggtcagactctttctctccaggtaccctgagagaaacacattttgggagtcccactctcagaccaaggttcagctcccatcaaagtactcctcagctcatacctgagttaaggcaatctttcaggaccactcagctgctgccccagcctctcaacaacacgttgggtcagtgcctgactcctttacctcagtgtcaaggtcactgtaactgagagcaaagctggcacgtgcctcccatcccactttgctcttgggaaaacccagtgcagccctgggatatttggaaggctattgcatattttttgattggattagaagcatgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacatggaggttgtggcatcagaaatatcacttaactaggtattggccaaggtactgatagccataaccatctccacaggtaactgtgatgaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttttgaaagagaatagttatacagtcctccacagcgaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattgggggttttgttatgttttgggttttttttagcagaaatgcagcccacaactttagtcagatccccccaatgttatttctcactttctaattcaggtttctctgggatatgcagctgagtattgtcacacaaagggtactcaccttctagcactgtaaagaaagaggctgcagatttgtccaaagaccccataaagctatgttttcttaaaggtgctctcatgggattctgggaagcagggcactgctagactctcctcagtgccatatccgagatttgtggtgactcaggcactgcctccctaaaaaggaccctttcaaaaaagcctcccagtcaggtagccaatcactctgcctcctcctagcacttctgcagtggcacattttggtttttcccagatctactgggagatagaaactttctcttttctggtgctcttctcctcactgctttttgggatctgtcatctcagatgaatgggtcccttctccaagaccaccctctgatgagttgacgtgtggtgtacccagcccctggggagataacatgccgcttccaggcatcatgaaacatgtttggtacccaccctggacttaatttcctatacagaatgcacctctggttggcaccttggtagaaactatcatggccctttgtgtgggaaaagtggcttgcattcctctacttcaggggtgcctattttgatgcattaccccattgtgcatctcacagaaagcctgccaagctgtggacaccagctctttctgcctcagagttctgcagctcgacctctctgcagcaagaaggtgttgacttgggaaccactgcatctgtcccaagtgcccagagaacggcagctccactacttcctctctgcagctgagcttagatttcttttagtcccctaagcttcccagtcagtgccagaagtcttgcagttaatcccagtccctgttgcctgtgcaggcacctgttgggtaccaacctgcccagcagctcttgctcacaccacatccttgccaaaccttcccttctgtttccccaggtgtggctgctttttgtttacagttccttgccatgaagttattagttatctcccattaataaggaacttggttttgcctgctatgtttgctttagcactggacaaacagcaatcaggatgttttacacgaggtccttctggcaagcactctatctcaggaacgcccaggcaagctgataactcagtcttcaagcatggtttcctagatcagctgaagtctgaaaataaattctagagcacctgagaacgtcagcataaagtggaagattgtgactactttcagatttgatggtgcaaggaccaaaacatgaaagtggaatcattcagagaaaaacacggtattacagaaatctggaaatgcagtggaaaattccttcagcaagactaactcaatgatactgcagaacagtgttttctattcctatttttcttggtgagtgcagtttgcatccataagacatgccaagagagacaagaagagcaatgtattaaggctgtgcacaagacgactgctgcggtgaagtccggaacctggctgaagctactaatgcctaacatggacaaaggagcatttagtgagctgggcttctacgtccctgcccttggctactcttgttgcagcctgcccctcattccccatggctctgccagggtcccacacatccctgtcagcctctctgcccaggggacccacacgggcagttctgagaagatgtccctgtgctgatctctctctggtcactgttatctctgcctcggggtcccattctgggagatgacgaaaatgctattcgagggagtcagcatttaaaatgggccgttagagagaaacgtcacagtgtctttgctaaagatagcctggtgctgagtaaaacagtgcctctaaaaccttccttttacaacatgctcactcagcataataacccctcggcctcaaacaccctcaaacacccaggcagctcctgtcattttcctgggctctccatcagtctcttgtgaccacctcttgggaagctgtagcagaatgggactacgtcctctgctttgctgagtcttacaagggataagcatttcctagagcatgaattcctttaaaagtggttttgagggctagagtggaatagtgccagggtgccaaggctacaagagcagagagagttgagatggagggagagagtaatgaactcagtgtgtccctcaagtgaagccaggagagggggagcagatgatgctggactgcagcaatgtatgtgtctccccaccacggttccaactcccttctctctctctctcaccttcacccacacactcacaccattcttgcactgctgattcaagggaaagaagcggttgatgctttctgcttgaactggtcaccacaaactgtttttcttgaacagtaggaaaaaaacacctcctgacaactgttgcaagttctcccctatctttgctcctctctttctctctcatgcgatcccatggactgtgttacacaagagggcatgtgggaccactacaaagcagtcccttggggacatggaggcacatgaggttccacctgtacaccagtcccactcctcaggaggctggagagccatgtgtgatgaaagagatgagacctgttgctgcaacaggggtctgctgaagcgaggcatagcactggcctgcttttatcctccaccttcaccacccagctgaggaaaaccagagagcaagcaaggatccttccacagttgaaaagtggccactatgagtcacctcccttcccccagcctgaggaaaagccccaacacttgggggatgagccaccgaggggcttagtgtctgacacatgtcatgaagggctgattaagtccgaaagagtcagagcagtgggctgctggaaagtgtgaaccacaacagtgggggttctctgagacaaaatgggtcccaggatgaggcacatggatggaaatgtatagccctatgtaaaggtcagcagcttaatgggagctaggttgagccccctctgtgcatgagcttgagtgggttttcccagaactgatggaggaggagggtcccttcctcacactcctcattgtgccacagtattcagcccctcttttcagttctgattccttcttctggatgctcctctctatctccttggaccacccgggctttgtcccatattggccctggactctagattgatgagtcacatgtgccctacttggagctcaccacagaccatttcctcatgctgcctgtgaactgaccaatgagaaaaagccaaggaattagctcatttggaggattaaagaaggaaagaaaaagaaaatgaagaaaaaaaaaaaaaaaaaacaagaagaaagaacagcagaaataaagaccaacatgttctcaaaagccctgaaacaattagagggaagctgtaagagacggaaagatcaaaccaaaaaaggtaagagatgaaagaaaaacatgaagggcacttgctgggaagtgtcttctacactttttccactggctatgtagaagcgaaatttgtaagaaaaacaacagcgactcaaagaatttccactaaaagatgcttacagctgtgtctctggtccctccctcctctgctctcacgtgcctcaggcttatactggtttcttggtggtgacgcatcttcttagtgatatgaggaaatttgctgcccacctgcaatataagggcatttagggaaatgcttcgatcagagagagagagagacggcatgagagcaagcacatcccactgacccctttttgcttacccaccaacctctagcaccttctttgcccatgcctcatttttactgatctcttcaagctttggaccttgtcaagcacggacccaagtaggaggcagcccctcgcctttcctggatgccaccatgaggctgatgtccctggtgctgttcctcacctttgtcctgctggctttcagtggtaagaggggctgaacctactggggagggcagtgtagctcagtaagctatgcctgggtgttacttggtccctgacaagactggaagggagagtttgtgcccttccaatccaccaaagatggccagatattgccctgctctctaacttgccctggcaaatgcagcatccccactctttgctcaactctttatcttgttacagctggtcacatcctagcaggattagcggagggggaaagcagggaccagaaaatgtgggtcagagaggggagttcagctgtgctgccctgccacttgagccccagaaaaacgagaaagagcttgaagcagctgcccgacaagatatctgtgcagtggaagaggcatgggggaaggactctgccttacacaatggcaatttctccctgcggattgaccccgtcaggagcgaggacgctgggctgtacgaggcacgggtggaatacaactcggaggtccatagctgccatgtggaactgggggtaattacagtaaccctcagtccacccaatcctgtggaagaaaatgagccgctcttgatgagctgcaactccagctaccaggccagccttgtggagatatgttggttccataacgggcacctgggccccacctccaggaccttctgctctttgtctggggctctctccatcctgcggccagccatgagtgatgcaggctcctggcgctgccagcttcgatactctgataacgagataatttctgccacgtacaacctgcaaattctaggttttgatggcccaaccaaccctgtggtctatgctgcagctggctctgcagcccatctaccatgcagcctgagctaccttcccagttcctttcagatgaacatggtgacagcccactggagccatcttgcaggaggacacttgcaagactgggacatcttcccaaatctgagtaacagaagcttccccctgcatctccctgtggtggggccgcgtgatgcagggcagtaccgctgtgctgtctctgtgggccacaaaacaatcagcagggaggtgaccttggcagtggttacagtgactccaagcatccaaggaccagtttctgaggggagtcgtttgctgctcatctgcagcctcacacactcccggggacatgaacgtttccagtggaagcaccttggctcagtccccactaagagcaagctggctgtggccaccctccaaaacctggagggcagcagcgcccagatgggacctatcttgaaaatacccaaagtgtcacaaaaggatacgggcacatgggaatgcagtgtatatggcccagaaggccaactgggaggagtggagtacaagctgcagatcacaagtgcccaggtctccagccctcctgctatgttcagtgggcaagttacttttgggctcacactcaccctcttccttctgcttgctgtctgtgttgtggctctggccctacagaaaagggcacagactcctgccttctcagcactggaagggatgattggagtccctgggccgaggaagtcgatgaaggaaaaccagaaagggaagatccagcaaactgagtgctgatagaagcagggacaccagggctagtctgcatgggaggatgaaaatctgtgtgccgtgctgcagagagatgggtgccatgcagacctgtcaggggggtctagggatggcatgaacaatgcagaaggcattgggagctctgtatctgcagaggggctgggagctgcctaccagggcaaggcaagcctcactgctgcagtaaggtggccagcagcacagatgctttggagctattgggagtatttgagccagtagctattgcctgctttagtgccaaatctctgcctactctttgtccttttttcgtggctcctctcacaacctttctctggtggaacaccaggatgcaggagatggctggaatctgtctttcctgcagcctgatggtgttttctgccccccttgctcgctttcttctccctctgcctgcactgccctgatcactgccctgttgcatattttgagcattttaacttattagaaactcattttagaactgaaaataaatcta

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