LOCUS       XM_016232129            1752 bp    mRNA    linear   VRT 04-MAR-2025
DEFINITION  PREDICTED: Sinocyclocheilus grahami vimentin-related 2 (vimr2),
            transcript variant X2, mRNA.
ACCESSION   XM_016232129
VERSION     XM_016232129.1
DBLINK      BioProject: PRJNA316320
KEYWORDS    RefSeq.
SOURCE      Sinocyclocheilus grahami
  ORGANISM  Sinocyclocheilus grahami
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_015505586.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_001515645.1-RS_2025_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/27/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Sinocyclocheilus grahami"
                     /mol_type="mRNA"
                     /isolate="Dianchi"
                     /db_xref="taxon:75366"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /geo_loc_name="China: Lake Dianchi, Yunnan"
                     /collection_date="2012-08-15"
                     /note="surface-dwelling"
     gene            1..1752
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:107550757"
     CDS             296..1366
                     /gene="vimr2"
                     /codon_start=1
                     /product="vimentin-4 isoform X2"
                     /protein_id="XP_016087615.1"
                     /db_xref="GeneID:107550757"
                     /translation="

MALLRVSSYRKLFEEEHWSQAAGRCGVQARFTARGGASVRECPELDFAAARALNMEGVARFVNERSVIAALNDRLAGLIDVVRCLEEENESLEAEIIELEEILESEQISTTTISISGPVDYSLEAVIERLRKEKEEILCNTEELKGELWRLQMKYNQVVEHKRLIQQEREDVSVRLEKLCEPRTPDEGSPTVSLQFPSFDITPAIMDIKEYYGTLAESLKFEFRASSTAAIDAAGKEEEQLAKLTGGKVKDVSKETDLNVLKNLIAELQKEVAELEKRGDELEAEIEARKAKCLEEIEKLENYICQLEEEEADLQFQMKDQSGDYEELLNQKMNLDIEIAAYRGLVEEEEERLSCL"

     misc_feature    <884..1351
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
ORIGIN      

ctgtattattataattattattattaatgctcaaataataagtaatactagtgcaacctcttcaaagctgaactgtcattgtcccagtataacagctttctgaaggagtggcctccaatctctaaattgtttctgctccatgtgaaaggtttatctcctgacgctgttcctctagttagtccatcttgtgttcagtgagagatcccacaagtgcttgtgacattctcagcaccagcgtctataaaaaccccctgttggtgcggttgtcatcttttcttgctgtcctgctgctgttatggccctgctgagagtgtcttcctaccgtaagctgtttgaggaggagcattggagccaggctgcaggacgctgtggagtccaggcccgcttcactgccaggggtggagcttcagtgcgtgaatgtcccgagctggattttgctgcagctcgtgccctaaacatggagggtgtggcacgatttgtcaatgaacgctctgtcattgctgccctcaacgatcgcctggccggcctcatcgacgtggttcggtgtctagaagaggagaatgaatctctggaggctgagattattgagctggaggaaatactggagtcagagcagatctccaccaccaccatcagcatcagcggtcctgtggactacagtctggaggctgtgatagagaggctacggaaagagaaggaggagattttatgcaacactgaggagctgaagggtgagctgtggcgtctgcagatgaaatacaatcaggtggttgagcacaagagactcatccagcaagagcgagaagatgtttctgtgagactggagaaattgtgtgagcccaggactccggatgaaggttctcctactgtatccctgcagttcccctcctttgatatcacaccagccatcatggacatcaaggagtactatggcacactagccgagagcctcaagtttgagttcagagcctcgagcactgccgccattgatgccgcaggaaaggaggaggagcagctggctaagttgactggagggaaagtgaaggacgtctccaaagagactgacttgaatgtcctcaagaacttgattgcggagctgcagaaagaggtggcagagctggagaagcgtggagacgagttggaggctgaaatagaagccaggaaagccaaatgcctggaggaaatagagaagctggagaattacatttgtcagctggaggaggaggaggctgatcttcagttccagatgaaggatcagagtggggactatgaagaactgctgaatcagaagatgaatctagacatagagattgctgcttacaggggtttggttgaagaagaagaggagagactgagctgcctgtaagatgcaagaagaggtgatgctctcctctggactgaagcagacacaaagaaacaataaaaccacatacaattcaacccttaactgcaaatctcacaaatcaggaaagtaaagaaaacagctgtcagacacacttaaccttctgagcagatgtaaaccttcactgacagatgaacttcagggagtttgtgcaagctcattgataacgggtcagtggcaggtaacctcgggtcttcaagaaacgctggatctgtgcagcagtgggagtgtgttgagagtgatgggggattttcagcactggaatctcctattgaaagtttcatagtccctatcactgagacacatacacaccctactgttgaaaagtttggggtcagcaagttttcttt

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