2024-03-28 22:59:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015483405 1886 bp mRNA linear ROD 01-JUL-2022 DEFINITION PREDICTED: Marmota marmota marmota vimentin (Vim), mRNA. ACCESSION XM_015483405 VERSION XM_015483405.2 DBLINK BioProject: PRJNA298354 KEYWORDS RefSeq. SOURCE Marmota marmota marmota (Alpine marmot) ORGANISM Marmota marmota marmota Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026000016) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jul 1, 2022 this sequence version replaced XM_015483405.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Marmota marmota marmota Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1886 /organism="Marmota marmota marmota" /mol_type="mRNA" /sub_species="marmota" /db_xref="taxon:9994" /chromosome="Unknown" /sex="male" /tissue_type="Spleen" /collected_by="Dr Markus Ralser" gene 1..1886 /gene="Vim" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 mRNAs, 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns" /db_xref="GeneID:107140393" CDS 163..1563 /gene="Vim" /codon_start=1 /product="vimentin" /protein_id="XP_015338891.1" /db_xref="GeneID:107140393" /translation="
MSSRSVSSSSYRRMFGGPGTGSRPSSSRSYVTTSTRSYSLGSALRPSTSRSLYASSPGGAYVSRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 202..465 /gene="Vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 466..1392 /gene="Vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 1886 /gene="Vim" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ccttggcggggtcccgtcctctgccactcttgctccgggtccccgtgctagagacgcagcagcgctcccaccgcccacacccaccgcgctctcgctagcctcttttcccagagactgtccgcaccgccgcagccgcccaaaccaccgcttccctccgtgaccatgtcctccaggtctgtgtcctcgtcctcctaccgcaggatgttcggcggcccgggcacagggagccggccgagctccagtcggagctacgtgaccacgtccacccgctcctatagcctgggtagcgcgttgcgccccagcaccagccgaagcctctatgcctcgtccccaggcggtgcctatgtctcgcgctcctcggccgtgcgcctgcggagcagcgtgcccggggtgcggctgctgcaggactcggtggacttctcactggccgatgccatcaacaccgagttcaagaatacccgcaccaacgagaaagtagagctgcaggagctaaatgaccgcttcgccaactatatcgacaaggtgcgtttcctggagcagcagaacaagatcctgctggccgagctggaacagctcaagggccagggcaagtcgcgtcttggggacctctatgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaatgacaaggcccgcgtcgaagtggagcgcgacaatctggctgaggacatcatgcggctccgagagaaattgcaggaggagatgcttcagagagaggaagccgagagcaccctgcaatctttcagacaggatgtggacaatgcatctctggcacgtcttgaccttgaacgaaaagtggaatccttgcaagaagagattgcctttttgaagaaactacatgatgaggaaatccaggagctgcaggctcagattcaggaacagcatgtccagatcgatgtggatgtctccaagcctgacctcacggctgccctgcgtgatgtacgtcagcagtatgagagtgtggcggccaagaaccttcaggaggcagaagaatggtacaagtccaagtttgctgacctctctgaggctgctaaccggaacaatgatgctctgcgccaggcaaagcaggagtcaaatgagtaccggagacaggtgcagtctctcacctgtgaagtggatgcacttaaaggaactaatgagtccctggaacgccagatgcgtgaaatggaagagaactttgccgtggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggctcgtcaccttcgtgaataccaagacctgctcaatgttaagatggctcttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggatttctctgcctcttcccaacttttcctccctgaacctgagggaaactaatctggattcgctccctctggttgacacccactcaaaaaggacacttctgattaagacggttgaaactagagatggacaggttatcaacgaaacttctcagcatcatgatgaccttgaataaaagctgtacacactcagtgcagcagtatattaccagcaagaataaaaaaagaaatccatatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagcgcaagatagatttggaataggaataagctctagatcttaacaaccgacactcctaaaagatttagaaaaaaagtttacaacataatctagtttacgaagaagtcttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgctttttcccagcaaatatctgaccaacttgtttctgcttcaataaatctttagaaaaacttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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