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2024-03-28 22:59:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_015483405            1886 bp    mRNA    linear   ROD 01-JUL-2022
DEFINITION  PREDICTED: Marmota marmota marmota vimentin (Vim), mRNA.
ACCESSION   XM_015483405
VERSION     XM_015483405.2
DBLINK      BioProject: PRJNA298354
KEYWORDS    RefSeq.
SOURCE      Marmota marmota marmota (Alpine marmot)
  ORGANISM  Marmota marmota marmota
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026000016) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 1, 2022 this sequence version replaced XM_015483405.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Marmota marmota marmota Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Marmota marmota marmota"
                     /mol_type="mRNA"
                     /sub_species="marmota"
                     /db_xref="taxon:9994"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="Spleen"
                     /collected_by="Dr Markus Ralser"
     gene            1..1886
                     /gene="Vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 53 mRNAs, 30 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 63 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:107140393"
     CDS             163..1563
                     /gene="Vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_015338891.1"
                     /db_xref="GeneID:107140393"
                     /translation="
MSSRSVSSSSYRRMFGGPGTGSRPSSSRSYVTTSTRSYSLGSALRPSTSRSLYASSPGGAYVSRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     misc_feature    202..465
                     /gene="Vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    466..1392
                     /gene="Vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
     polyA_site      1886
                     /gene="Vim"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ccttggcggggtcccgtcctctgccactcttgctccgggtccccgtgctagagacgcagcagcgctcccaccgcccacacccaccgcgctctcgctagcctcttttcccagagactgtccgcaccgccgcagccgcccaaaccaccgcttccctccgtgaccatgtcctccaggtctgtgtcctcgtcctcctaccgcaggatgttcggcggcccgggcacagggagccggccgagctccagtcggagctacgtgaccacgtccacccgctcctatagcctgggtagcgcgttgcgccccagcaccagccgaagcctctatgcctcgtccccaggcggtgcctatgtctcgcgctcctcggccgtgcgcctgcggagcagcgtgcccggggtgcggctgctgcaggactcggtggacttctcactggccgatgccatcaacaccgagttcaagaatacccgcaccaacgagaaagtagagctgcaggagctaaatgaccgcttcgccaactatatcgacaaggtgcgtttcctggagcagcagaacaagatcctgctggccgagctggaacagctcaagggccagggcaagtcgcgtcttggggacctctatgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaatgacaaggcccgcgtcgaagtggagcgcgacaatctggctgaggacatcatgcggctccgagagaaattgcaggaggagatgcttcagagagaggaagccgagagcaccctgcaatctttcagacaggatgtggacaatgcatctctggcacgtcttgaccttgaacgaaaagtggaatccttgcaagaagagattgcctttttgaagaaactacatgatgaggaaatccaggagctgcaggctcagattcaggaacagcatgtccagatcgatgtggatgtctccaagcctgacctcacggctgccctgcgtgatgtacgtcagcagtatgagagtgtggcggccaagaaccttcaggaggcagaagaatggtacaagtccaagtttgctgacctctctgaggctgctaaccggaacaatgatgctctgcgccaggcaaagcaggagtcaaatgagtaccggagacaggtgcagtctctcacctgtgaagtggatgcacttaaaggaactaatgagtccctggaacgccagatgcgtgaaatggaagagaactttgccgtggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggctcgtcaccttcgtgaataccaagacctgctcaatgttaagatggctcttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggatttctctgcctcttcccaacttttcctccctgaacctgagggaaactaatctggattcgctccctctggttgacacccactcaaaaaggacacttctgattaagacggttgaaactagagatggacaggttatcaacgaaacttctcagcatcatgatgaccttgaataaaagctgtacacactcagtgcagcagtatattaccagcaagaataaaaaaagaaatccatatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagcgcaagatagatttggaataggaataagctctagatcttaacaaccgacactcctaaaagatttagaaaaaaagtttacaacataatctagtttacgaagaagtcttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgctttttcccagcaaatatctgaccaacttgtttctgcttcaataaatctttagaaaaacttt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]