2024-05-04 17:00:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015440231 3711 bp mRNA linear PRI 08-DEC-2021 DEFINITION PREDICTED: Macaca fascicularis retina and anterior neural fold homeobox 2 (RAX2), transcript variant X1, mRNA. ACCESSION XM_015440231 VERSION XM_015440231.2 DBLINK BioProject: PRJNA690070 KEYWORDS RefSeq. SOURCE Macaca fascicularis (crab-eating macaque) ORGANISM Macaca fascicularis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052273) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 8, 2021 this sequence version replaced XM_015440231.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca fascicularis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3711 /organism="Macaca fascicularis" /mol_type="mRNA" /isolate="CE1976F" /db_xref="taxon:9541" /chromosome="19" gene 1..3711 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 16 ESTs, 5 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns" /db_xref="GeneID:102136169" CDS 247..939 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X1" /protein_id="XP_015295717.2" /db_xref="GeneID:102136169" /translation="
MPAPVEGTDLPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSRQVGAMFLSPSEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(466..480,484..486,535..537,553..555,592..594, 598..603,610..615,619..627,631..636) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(472..474,481..483,601..603,610..615,622..624) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 475..633 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" polyA_site 3711 /gene="RAX2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tcctcccccacccaaccccgacccggctcaggtctggcagggccaggccacagcagacgcggcgccgggccctctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggccgtgacagccacagagaggggaagagaaaacagggacggtgacacacacagaaggaagaacagacagaggcccagcaggagacccccacaagcccgaggaggacagcccggggatgcagagcgcatgccggccccagtggagggaacagatctccccggagccgggaggcaagcctggggctcccctgccctgtccctgccggtagcccccccggccgtctccccgccatctgtcccgctgccgtctcgccaggtgggagccatgttcctgagcccgagcgagggcccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctcccactacccggatgtctacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagccccgagacttcctgaggccccggcgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccaggcccggggctgcaagcatccttcgggcctcatgcctttgctcctaccttcgcagacggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggacagggcttggccgccagcctgagcctgctgccctcctgggccccctcctcggttcagcctgagagctggagacgtgccctggtgacagccaccacgccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccatcactggggagcgggaccagagacaggctgctgggtcccccgcccccatcctgtcccccacccgatcaccacccgtcctgctggcagcggaccggccccagtgtcaggcaggaggtgacccaagtattcctaggccaaggacggggaccctcctcccctcctggggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctgtgaggctgagtggcggggccgctgactctgtaagatgagtgtacatctctctgctgctcccactccccatcagcagagctgcccgctctccaggctcccggtccccccgaaatgacagtaacggcagctcccgcgagcctgctctcctttcacggtgcacccaccacgtgagcgctcccctctccgttgcgccctggacctcgggcacagccgtcagcccattctacagagagggaaactggggctcaggcaggaagccaggtccccaaggttgcacggctaggagtgggtgaagctgcctttcagacccatcaccggcccccccatccgaggcacggcagcaggttctggagggagggtggggcctcgtgtggaggcgggctggtgctggctgtgtcgtcatcagcccctgttcctcgcgtccccacagaccccaggccccgtgcatgtcctccagccctgcggaggcactgctggcgtctgctctgtccaacccagttgcattgcccaagagctctgaggaaggaggctgtcgcggggctgagaacccgctgttactggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggacagtcttggccagggccaccccctgagacagaagtgcggcaccagggcaggagctgcagtagctaccctcctcgtctccagcccgggctccccagatcactcccagatcaccagggcaccccatctccaggcggcacctcacacactagtcttgtggcccaacgcccagccaatgtcactgtgcaccaggcactggggacacggcagtaagcacaagaaagattttttttttctttttaacctaaaccaggccaggtgtggtggctcatgcctgtaatcccagtgctttgggacgctgaggtgggaggattgcttgagaccagtctgggtgacatagcaagactcagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacacttgtcatcccagggacccgagaagctgaggcaggaggattgcttgagcccagaaggtcgaggctgagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaaaacaaacctaaagcataagacttcagtgataagcgatagggagaaaaaccaaccaggaaaggcagatggggagtgtggcaggggctgcaattgtaacagggagttctggaggaggggaggctggcgtgaaggtggagaccggggcgggagggaggtggtctaggggaggagggggctgggcagaggcataggccgtgcaaaggccctggggcagggccgcgcctggtgcattggcagaatagcaaggaggcccgtgtggctggagtacagtgaggagggggaggagggaggtgacggggaggccaggcagggcagtggctgttataactttgatttttgccctgagaaccttggggaataacaggagggtgggaacagggctggcaccaccagctgtgagtgcaagagaaggcgtgctcacacccccgcctgcccggggaggccaccggggacagcaggtgcgtggtaatccgctccactccagagttccctaagaggatgaaggttagggtttccctgggacgggaagaattagcctcgggtcctcaccccgcccatccagcttgtggacagaggaagccagagggtgggtgagcccagcccaaagcccctagggtacccacctaggaatgggtggggctgctgtggcaagggtagggatgagggcatgacccttgggggttctgcaggatgtggggtccatgaggtgatctacccccaccaagaggccccatcactccctaactaggtgtcccccctcccgcctcctccaatctggtgcgctccagccctcaggatcccgccccattgctcctcatcacagccaggcagggcaggagttgggactgcagggaggccagtcctcactcgggctgtgggtcagggtcagggtgctgaaagcagactccagagggtggactgggggcggaggttgagacctgggctccagtggagtggacagaggacttgggggtgcagaaggaaggcccaagcccctgggctccagggataggccatcgaggaccacactgtgactgtggcaggaaggaaggggcagtcccttccctctgattctacttgctgtgctggtgaggacatcagccaggagccctggggctaccctgcccatgagtgcgagcccctgggggatccaaggaccctgagatggagagggccttgggtctgaatatggaagcacctggatccagccacacctgcagccacaccgctacccccccggacatctctgttcttgaagctcataaagcctcttttctgactctga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]