2024-04-29 14:11:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015392925 1814 bp mRNA linear VRT 14-JAN-2016 DEFINITION PREDICTED: Cyprinodon variegatus testis and ovary specific PAZ domain containing 1 (topaz1), mRNA. ACCESSION XM_015392925 VERSION XM_015392925.1 DBLINK BioProject: PRJNA308224 KEYWORDS RefSeq. SOURCE Cyprinodon variegatus (sheepshead minnow) ORGANISM Cyprinodon variegatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015151068.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Cyprinodon variegatus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1814 /organism="Cyprinodon variegatus" /mol_type="mRNA" /isolate="N-32" /db_xref="taxon:28743" /chromosome="Unknown" /sex="female" /country="USA: Navarre, FL" /collection_date="17-Sep-2010" gene 1..1814 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:107096322" CDS 40..1779 /gene="topaz1" /codon_start=1 /product="testis- and ovary-specific PAZ domain-containing protein 1" /protein_id="XP_015248411.1" /db_xref="GeneID:107096322" /translation="
MCRFLHLPREGDEKMCVDTVARFSNHLASLQRAGAVFAGYYQSSPPGEYFSRPVYLSLLWALLKAGMVSSIFSVLRVSLVYNLVPGHDFLLALFSYVRDKALVGFIPELLQHTIKMVSSGLELNLDCIENVKNTPMFQQTAHQISHAASLGSKNLSACPPNPDFLNLVHGNVEIQLCAKQEDWRRMGEVYRSICQLSQHPIHVERITGQIAIALLAENKNKVALPFAAFVESVCKNEDKDDSVVRSFVGRIGVSLMLRYHKNHHWHKGCKVVQVLSSLKMDYVTLKSLFGNEDGASPCFLITVAAELFLMSGMAEAALNTFREHGWFLGSWARPSKPADLESRTNVQIQLARKISIRDTLEVLCNLPGVKEPIDSIDISRYAPHFTSHLQMCLETERHTFLPVASDTVEFMLSKGLAVDPLLLQTTIEKLGRQNHWLRAREVFKHSLSVGYYPEVSAEPGLMELTVPCSLGEVELVLSLEMFVALNASVILLSDTVTPTLSITLKRTLNSEVDYISAGTRLLLASSLPQPKLDVHYTNVNVSQEQVFRLDVASARRWLHRNHLWASELWTPRARCLDQN"
misc_feature 559..1077 /gene="topaz1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
agaaattacttctgtgaatggcagtcatgtgacctcaaaatgtgtcgctttctgcatctacctcgcgaaggggacgagaagatgtgtgtcgacacggttgcgaggttttccaatcatctggcatcccttcagcgagcaggagctgtgtttgcaggatactaccagagcagcccaccaggggagtatttctccaggcctgtgtacctgtccctgctctgggctctgctcaaagccggcatggtgtctagcatcttctcagtgcttcgtgtcagcttggtctacaatctagtgccgggccatgacttcctgctggctctcttcagctacgtcagagacaaggctctagtcggctttattccagagctactgcaacacacaatcaagatggtcagtagtggtttggagctgaacttggactgcatcgaaaatgtaaaaaacactcccatgtttcagcagacggcccatcagatttcacatgcagcttcacttggcagcaaaaacctgtctgcctgcccacctaatccagacttcctgaatttagtgcatgggaatgtggaaatccagctctgtgccaaacaggaggattggaggcggatgggtgaggtgtataggtccatctgccagctgagccaacaccccatccacgtggagcgcatcaccggccagatcgccatagccctgctggctgagaacaaaaacaaggtggcgctgcccttcgctgcttttgttgaatcagtgtgtaaaaatgaagataaggacgacagcgtggtgaggagttttgttggcaggatcggagtctctttgatgttaagataccacaaaaaccatcattggcataagggctgcaaagtggtgcaggtgctgtccagtttgaaaatggactacgtgacactgaagagcttatttgggaacgaggacggagcatcgccctgtttcctgatcaccgtggctgcagagctcttcctgatgagtggaatggcggaggcagcgctgaacacattcagagagcatggctggttcctcggttcatgggcccgaccatctaagcccgctgatctagagagtcggactaatgttcagatccaactggccaggaaaatctctatcagggacacattagaggtgctctgtaacctgccaggagtcaaggaacccatcgactcgatcgacatctccaggtacgctcctcactttacgtctcacctccaaatgtgtttggagacggagagacacacatttcttcctgtagcgtccgacacggtggagttcatgctgtctaaagggctggctgtggatcccctgctgctgcagacgacgatcgagaaacttggccgacagaaccattggctgcgggcgcgggaagtcttcaaacactccctgagtgtgggctactatccagaagtgtctgcagagcccggtttgatggagctgaccgtcccctgctcgctcggagaggtggagctcgttctcagcttggagatgtttgtggccctgaatgcatcggtcatccttctgtctgacaccgtcacccccaccctcagcattactctgaagaggactcttaactctgaggtggattacatctcagcagggacccggctcctcttagcatcgtcccttcctcagcccaaactggacgtccattacaccaacgttaacgtctcccaggaacaggtgttcaggttggacgttgccagtgcgcggcgctggctccacagaaatcacctgtgggcctctgaactgtggactccccgcgctcgatgtttagaccaaaactgagcgaggtgagtagtcagcattacgtacagcatcag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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