LOCUS       XM_013930056            2979 bp    mRNA    linear   INV 31-AUG-2017
DEFINITION  PREDICTED: Limulus polyphemus copper-transporting ATPase 2-like
            (LOC106469561), transcript variant X2, mRNA.
ACCESSION   XM_013930056
VERSION     XM_013930056.2
DBLINK      BioProject: PRJNA238073
KEYWORDS    RefSeq.
SOURCE      Limulus polyphemus (Atlantic horseshoe crab)
  ORGANISM  Limulus polyphemus
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata;
            Merostomata; Xiphosura; Limulidae; Limulus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_013669155.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 31, 2017 this sequence version replaced XM_013930056.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Limulus polyphemus Annotation
                                           Release 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Limulus polyphemus"
                     /mol_type="mRNA"
                     /db_xref="taxon:6850"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="muscle"
                     /geo_loc_name="USA: Woods Hole, MA"
                     /collection_date="Jan-2008"
     gene            1..2979
                     /gene="LOC106469561"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:106469561"
     CDS             223..2697
                     /gene="LOC106469561"
                     /codon_start=1
                     /product="copper-transporting ATPase 2-like"
                     /protein_id="XP_013785510.1"
                     /db_xref="GeneID:106469561"
                     /translation="

MAEHATSIVAIEGMTCQSCVSTIEKNISSVPGVKSIKVYLGRKKAEITFDSRVVTIKELAAQIEDMGFEACPEDSIVSLPTLQDVTLRVQGMTCESCVRNIERRVSSQAGVHTVKVSLQEELARIAYNINETNPQTLLNIINEMGFTATVSPENTKSTKLQESSRNYSSVVRIHIQGMTCQSCVSKIEENLINSPGIRNIIVSLEDCLATVKFNPLEVTPEQLQNMIEDMGYEATLLTDKAKNVAVCSQDSNSHKMNSDQATGTLKVKGMTCMSCVHNIEDHIGTVKGIISIKVSLQENSATVQYQPSLISLQQIAEMIDNMGFECEVQDSQKLVMDPWVPRISHPQNTVTSSDQTDIGIEKRGPSPNKHTKQYTKLLFAEGDDLEKCFIRITGMTCASCVAAIEKHLTHLDGIHYVLVALMAQKAEVKFDPAYIMPSQIANAITELGYMSSVIEDVSSGQGELELEIHGMTCVSCVHSIESNLIKRPGIISVSIALATQLGKFQFDPEVTGPRDIVDAIKDLGFGASTITDHRRDASYLSQKEEVKKWRNSFLFSLVFGLPSMAVMMYFMGIRMSTGKHDICCLIPGLSTENLFLWILATPVQFIGGRYFYVHALKAIKHRMANMDVLIMLATNIAYFYSVAVLIYFMIDGADHSPKTFFETPPMLLVFISLGRWLEHIAKGKTSEALAKLISLQATEATLVDVDSDCQIISEKQIDVELVQRGDILKVVPGEKIPVDGRVTFGNSMADESLITGESLPVAKRPGSQVIGGSINQNGMLLISATHIGKDTTLAQIVKLVEEAQTSKVHNNFKFVILTLRYPVM"

     misc_feature    247..432
                     /gene="LOC106469561"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(262..270,277..279)
                     /gene="LOC106469561"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    478..669
                     /gene="LOC106469561"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(496..504,511..513)
                     /gene="LOC106469561"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    745..927
                     /gene="LOC106469561"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(754..762,769..771)
                     /gene="LOC106469561"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1012..1203
                     /gene="LOC106469561"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1030..1038,1045..1047)
                     /gene="LOC106469561"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1390..1569
                     /gene="LOC106469561"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1405..1413,1420..1422)
                     /gene="LOC106469561"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1615..1806
                     /gene="LOC106469561"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1633..1641,1648..1650)
                     /gene="LOC106469561"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1873..>2643
                     /gene="LOC106469561"
                     /note="The haloacid dehalogenase (HAD) superfamily
                     includes carbon and phosphorus hydrolases such as
                     2-haloalkonoate dehalogenase, epoxide hydrolase,
                     phosphoserine phosphatase, phosphomannomutase,
                     phosphoglycolate phosphatase, P-type ATPase, among others.
                     These...; Region: Haloacid Dehalogenase-like Hydrolases;
                     cl21460"
                     /db_xref="CDD:473868"
ORIGIN      

agtacctatacatgtgaaataagtctatcgtttggctaagttattcatgatttacttggaagttgaagtttattgaagaaggccaaactacccaacaaaaagttgcctatccaatcatcctgacacgaaagttagaaaggacgacgtgtgtatttatttctacgcctgaagtttccaacaagctacatcagttgggtgcagtttaatttataagaagtcgtcatggctgaacacgcaacgtcaatagtggcaatagaaggtatgacttgtcaatcgtgtgtcagcactattgagaagaatatttcaagcgttcctggggtgaagagtattaaggtttatcttggcaggaagaaagctgagatcacgtttgatagtagagtggttacaataaaagaattagcagcccaaattgaagacatgggttttgaggcctgtcctgaggattctatcgtttctctgccaacactacaggacgtcacactacgagtgcagggcatgacttgtgaatcatgcgttcgtaacattgaaagacgcgtatcgtcacaagcgggtgtacataccgtgaaagtttctcttcaggaagaattggcaaggattgcatacaatattaatgaaacgaatccacagacgttacttaacatcatcaacgagatgggtttcacagctactgtttctccggaaaatactaaatcaacgaaattacaagaatcctccaggaattattcgtctgttgtgagaatccacattcagggaatgacatgtcagtcctgcgttagtaagatagaagaaaatttaattaacagtccaggtattagaaatataatagtgtcactagaagattgcttggccactgttaaatttaaccccttagaagttacaccagaacagctacagaatatgatagaagacatggggtatgaagccactcttttaacagataaagctaaaaatgtcgctgtatgtagtcaagatagtaacagtcataaaatgaattctgaccaagctactggaactttgaaagtcaaaggaatgacctgtatgtcttgtgttcataatattgaagatcatatcggcacggtgaaaggtatcattagtattaaagtatcattacaggagaactcggccactgttcagtaccagccttctttgataagccttcaacagatagcagaaatgatagacaacatgggatttgaatgtgaagtacaagactcccagaagctggtaatggacccatgggtacctcgcatctctcatccacagaatacagtaacaagtagtgaccaaacagacatcggcattgagaagagaggaccaagccccaacaaacatactaaacaatacaccaagttactatttgctgaaggagatgacttggaaaaatgtttcatccgaataacaggcatgacttgtgcatcgtgtgttgctgccattgaaaaacatttaacacacttggatggaatacattatgtgttggttgcactcatggctcagaaggcagaggttaagtttgatccagcttatatcatgccatctcagatagcaaatgctatcacagaactaggctacatgtcttcagtaatagaggatgttagctcaggtcaaggagaacttgagctagagatccatggaatgacgtgtgtttcctgtgtgcattctatagagagtaacttgataaaacgccctggcatcatctcagtatccattgctcttgccacgcagttaggtaaatttcagtttgatcctgaagttacgggccctcgggatatcgttgatgctattaaggatttgggatttggtgcctcaactattacagaccacagaagagatgctagttacttatctcaaaaagaagaggtgaaaaagtggagaaattctttcctgttttctcttgtctttggtctcccttctatggcagttatgatgtattttatgggaatacgtatgtcaactggaaaacatgacatatgctgtcttataccagggttgtcaacagagaatctgtttctatggatcctagccactcctgtccagttcataggaggacgatatttttacgtccatgccttgaaagccataaaacacagaatggcaaacatggatgtacttattatgctggccacaaatattgcctacttctatagcgtagcagttctgatttacttcatgatagatggagctgatcacagtccaaaaacattttttgagactccaccaatgctgttggtgtttatttcacttggacgatggttggaacacatagcaaaaggtaagacttctgaggctctggcaaaacttatttcgctacaagcaacagaagctacacttgtcgatgtagactctgattgtcagattatatccgaaaaacaaattgatgtggagcttgttcaacgtggggatattttaaaggtagttcccggtgaaaaaataccagttgatggcagagttacctttggaaattcaatggcagatgaatcacttattacgggggaatctctacctgtagccaaacgtccaggttctcaggttattggaggttctatcaaccaaaatggaatgctacttatcagtgctacccatatagggaaagacacaacattagcccagattgtgaaactggttgaagaagcacagacctcaaaggtacataataattttaagtttgttattttaactcttagatacccagtaatgtaaataatgtataaattggataagcaaaaaaaaaaatatgatacattgacacaaccaatttctttaacaactgtaaaccccccaattagaccacctgtaactcttcttttttcaagagaaaaattccagggatcacattagtagcccttctctgatccctttccaattcaacgtccttcttaaggtaagaagcttattaaaactgaacacagtactctagatgtgacttatccaatgacttacacaatgaaattataacttatttagccttctatttctgtagac

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