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2024-03-29 09:37:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_011505325             714 bp    mRNA    linear   INV 09-MAR-2015
DEFINITION  PREDICTED: Ceratosolen solmsi marchali homeobox protein E60-like
            (LOC105366778), transcript variant X1, mRNA.
ACCESSION   XM_011505325
VERSION     XM_011505325.1
DBLINK      BioProject: PRJNA277475
KEYWORDS    RefSeq.
SOURCE      Ceratosolen solmsi marchali
  ORGANISM  Ceratosolen solmsi marchali
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Proctotrupomorpha; Chalcidoidea; Agaonidae; Agaoninae; Ceratosolen.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_011948456.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Ceratosolen solmsi marchali
                                           Annotation Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Ceratosolen solmsi marchali"
                     /mol_type="mRNA"
                     /sub_species="marchali"
                     /db_xref="taxon:326594"
                     /chromosome="Unknown"
                     /sex="male"
                     /country="China: Danzhou, Hainan"
     gene            1..714
                     /gene="LOC105366778"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:105366778"
     CDS             46..420
                     /gene="LOC105366778"
                     /codon_start=1
                     /product="homeobox protein E60-like isoform X1"
                     /protein_id="XP_011503627.1"
                     /db_xref="GeneID:105366778"
                     /translation="
MLFGERPRTRRTKVKDELIRTAVPEEKRPRTAFSIEQLARLKREFAENKYLTEQRRQALSKELGLNEAQIKIWFQNKRAKIKKASGQKNPLALQLMAQGLYNHSTVPLSKDELEQAAELQANGI"
     misc_feature    order(124..138,142..144,193..195,211..213,250..252,
                     256..261,268..273,277..285,289..294)
                     /gene="LOC105366778"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    130..291
                     /gene="LOC105366778"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(130..132,139..141,259..261,268..273,280..282)
                     /gene="LOC105366778"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    295..381
                     /gene="LOC105366778"
                     /note="Engrailed homeobox C-terminal signature domain;
                     Region: Engrail_1_C_sig; pfam10525"
                     /db_xref="CDD:431338"
ORIGIN      
agtaagtaacaccaggatctaccgggtccggtattatctgctgaaatgctgtttggagagcgtccacgaacgcgacgtacgaaagtgaaggatgaactaattagaacagctgtaccagaggaaaagcgacctcgaacagctttcagtatagaacaattagcaagattaaagcgtgaattcgctgagaacaaatacctgactgaacaacgtcgtcaggctctttcaaaagagttaggtctcaacgaggcacaaataaagatttggtttcagaacaaaagggcaaagatcaagaaagcaagtggccagaagaacccattggcgttacaattaatggcacagggcctttacaatcattcaacggtaccgctatcgaaggatgagttggaacaagccgctgaactacaagcgaatggaatataaaaaaaaacagaaatatgtatactatgaagaaatcaaacaattctaaaaaatcctttaaactgtctgacaaacatcctttaatttaaaaattggattttacagagctgtatttccgtaaatacatctagagattgtttattgattaacatttttttttaatatgacaatataatacatcttaaatgcaaaataaaagaaattattcgagccaattcgccattatccatatacaaatggctaattagtaattgaagacaggcaattgaatgatggagaaagagttctttatatata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]