2024-03-29 09:37:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011505325 714 bp mRNA linear INV 09-MAR-2015 DEFINITION PREDICTED: Ceratosolen solmsi marchali homeobox protein E60-like (LOC105366778), transcript variant X1, mRNA. ACCESSION XM_011505325 VERSION XM_011505325.1 DBLINK BioProject: PRJNA277475 KEYWORDS RefSeq. SOURCE Ceratosolen solmsi marchali ORGANISM Ceratosolen solmsi marchali Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Agaonidae; Agaoninae; Ceratosolen. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_011948456.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ceratosolen solmsi marchali Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..714 /organism="Ceratosolen solmsi marchali" /mol_type="mRNA" /sub_species="marchali" /db_xref="taxon:326594" /chromosome="Unknown" /sex="male" /country="China: Danzhou, Hainan" gene 1..714 /gene="LOC105366778" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:105366778" CDS 46..420 /gene="LOC105366778" /codon_start=1 /product="homeobox protein E60-like isoform X1" /protein_id="XP_011503627.1" /db_xref="GeneID:105366778" /translation="
MLFGERPRTRRTKVKDELIRTAVPEEKRPRTAFSIEQLARLKREFAENKYLTEQRRQALSKELGLNEAQIKIWFQNKRAKIKKASGQKNPLALQLMAQGLYNHSTVPLSKDELEQAAELQANGI"
misc_feature order(124..138,142..144,193..195,211..213,250..252, 256..261,268..273,277..285,289..294) /gene="LOC105366778" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 130..291 /gene="LOC105366778" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(130..132,139..141,259..261,268..273,280..282) /gene="LOC105366778" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 295..381 /gene="LOC105366778" /note="Engrailed homeobox C-terminal signature domain; Region: Engrail_1_C_sig; pfam10525" /db_xref="CDD:431338" ORIGIN
agtaagtaacaccaggatctaccgggtccggtattatctgctgaaatgctgtttggagagcgtccacgaacgcgacgtacgaaagtgaaggatgaactaattagaacagctgtaccagaggaaaagcgacctcgaacagctttcagtatagaacaattagcaagattaaagcgtgaattcgctgagaacaaatacctgactgaacaacgtcgtcaggctctttcaaaagagttaggtctcaacgaggcacaaataaagatttggtttcagaacaaaagggcaaagatcaagaaagcaagtggccagaagaacccattggcgttacaattaatggcacagggcctttacaatcattcaacggtaccgctatcgaaggatgagttggaacaagccgctgaactacaagcgaatggaatataaaaaaaaacagaaatatgtatactatgaagaaatcaaacaattctaaaaaatcctttaaactgtctgacaaacatcctttaatttaaaaattggattttacagagctgtatttccgtaaatacatctagagattgtttattgattaacatttttttttaatatgacaatataatacatcttaaatgcaaaataaaagaaattattcgagccaattcgccattatccatatacaaatggctaattagtaattgaagacaggcaattgaatgatggagaaagagttctttatatata
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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