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2025-10-15 08:25:16, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XM_009694676            1754 bp    mRNA    linear   VRT 21-OCT-2014
DEFINITION  PREDICTED: Cariama cristata testis- and ovary-specific PAZ
            domain-containing protein 1-like (LOC104157368), partial mRNA.
ACCESSION   XM_009694676
VERSION     XM_009694676.1
DBLINK      BioProject: PRJNA263623
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cariama cristata (Red-legged seriema)
  ORGANISM  Cariama cristata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Cariamiformes; Cariamidae; Cariama.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_009602233.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Cariama cristata Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 25% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Cariama cristata"
                     /mol_type="mRNA"
                     /isolate="BGI_N322"
                     /db_xref="taxon:54380"
                     /chromosome="Unknown"
                     /sex="male"
     gene            <1..1754
                     /gene="LOC104157368"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:104157368"
     CDS             <1..1754
                     /gene="LOC104157368"
                     /codon_start=3
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1-like"
                     /protein_id="XP_009692978.1"
                     /db_xref="GeneID:104157368"
                     /translation="
YRSSGKSPLLPLQNYGNFEPWKMEENALASRSVQQILQMIELPRKYCRFYFMTLRGCERAKCWFWHVPEQGDEKPAVDVLLKVFEHVASLNIRDAVPTLISTFCKLIDAGMFLEFEHFDCIIKFLHQLQVSSQEINTVLNIKSSTFQPRISVFYQCNLPHMLEERHFEKNWLFDFNLAATEIQHCREKSDWTKLGALYVNARTGCEHFDFQKLSLCVAEILTRDSETEKPGVPFCDFADAVIKNSQHNEADRIFIGRSGISVMYSYHKVLQWMKGRKVLDKLHELKIHFTVLKGLTGPESLASRCQIVNKAAEIFLKTGSLDGATWVLRESEWTTNAPLWPCDKVDILNRHNLLCTLVHKYLTKSLYRQAFEVLRNLPGFQNRSDTVNVSQYNCLFNKLIKACFESKNLGVSSSAVDFMLSKNIAIDFFLLRELITALGRSSLWCKARTYYKSALSLGCYPPLQGNLYHKFLRIPSYLSEIEMLLAIEIFLVSNASDIQSPMATSQTLQIILKRCEDQTVQNNSDYQAAAERLILAAHISDPKLFLKHMTMNVNMEEVYSLELTSALKWLQENMKWAGKVWLF"
     misc_feature    546..1070
                     /gene="LOC104157368"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      
attacagatcttcaggaaaaagtcctttactgccattgcaaaattacggaaattttgaaccatggaagatggaagaaaatgcacttgcttctcgttcagtccagcagatcctccagatgattgaattgccccgtaaatactgcagattttatttcatgactttgcgtgggtgtgaaagagcaaaatgttggttttggcatgttcctgaacaaggggatgaaaagccagctgtagatgttcttctgaaagtttttgagcatgtggcttctttgaatataagagacgctgtgcctacattaatcagtaccttttgtaagctcattgatgctggtatgttccttgagtttgaacattttgactgtattattaagttccttcatcaattgcaagtttccagtcaggaaataaatactgttttgaacataaaatccagtacctttcagccacggatctcagtgttttaccagtgcaacttaccacacatgttggaggaaagacattttgaaaagaactggctttttgacttcaacttggcagcaactgaaattcagcattgcagggaaaaaagtgattggaccaagctgggagctttgtatgttaatgcgagaactggatgcgaacattttgattttcagaaattgtctttatgtgttgctgaaatactaaccagagattctgagacagaaaaaccaggagttcctttttgtgattttgctgatgcagtaataaaaaattcacaacataacgaagcagacagaattttcattggaaggagtgggataagtgtaatgtattcttatcacaaagtactgcagtggatgaagggaaggaaggttttggataaattgcatgagctaaagatacattttacggtcttgaaaggacttacagggccagagagtttagcatcaagatgtcaaattgttaataaagctgcagaaatttttcttaaaacaggaagtttggatggagcgacatgggtattgagagagtcagagtggaccacaaatgcaccattgtggccctgtgataaagtggatatcctcaatcgacataacctgttatgtacactagtgcacaaatacttgacgaagagtttatacaggcaggcatttgaagttctgcggaacttacctggttttcaaaatcgttctgatactgtaaatgtttctcagtacaactgcctttttaacaagctgataaaagcctgttttgagagcaagaatcttggggtctcatcttctgcagtagacttcatgctttcaaaaaacattgctattgatttttttttacttagagaattaatcacagctttgggaagaagttctttgtggtgtaaagctaggacctattacaaaagtgctttatcattgggttgctacccaccactgcagggaaatttatatcacaaatttttgagaattccgtcttacctgtctgagattgagatgctgctggccattgaaatatttcttgtttccaatgccagtgatattcagagtccaatggctactagtcagactcttcaaataatactgaaaagatgtgaagatcagacagttcagaataacagtgactatcaagcggcagcagagagactgatcctggctgctcatatatctgatccaaagctttttcttaagcatatgacaatgaatgttaatatggaagaagtttacagcttggagcttacatctgctctaaaatggcttcaggagaatatgaaatgggctgggaaggtctggctgttttag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]