2024-05-04 17:15:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009434361 2952 bp mRNA linear PRI 11-APR-2023 DEFINITION PREDICTED: Pan troglodytes retina and anterior neural fold homeobox 2 (RAX2), transcript variant X1, mRNA. ACCESSION XM_009434361 VERSION XM_009434361.4 DBLINK BioProject: PRJNA945513 KEYWORDS RefSeq. SOURCE Pan troglodytes (chimpanzee) ORGANISM Pan troglodytes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_072417) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Mar 28, 2023 this sequence version replaced XM_009434361.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_028858775.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2952 /organism="Pan troglodytes" /mol_type="mRNA" /isolate="AG18354" /db_xref="taxon:9598" /chromosome="19" /sex="male" /cell_line="AG18354" /cell_type="lymphoblastoid" /tissue_type="blood" gene 1..2952 /gene="RAX2" /gene_synonym="RAXL1" /note="retina and anterior neural fold homeobox 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 6 Proteins" /db_xref="GeneID:468668" /db_xref="VGNC:VGNC:2273" CDS 718..1272 /gene="RAX2" /gene_synonym="RAXL1" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X1" /protein_id="XP_009432636.1" /db_xref="GeneID:468668" /db_xref="VGNC:VGNC:2273" /translation="
MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQAMDRAWPPA"
misc_feature order(799..813,817..819,868..870,886..888,925..927, 931..936,943..948,952..960,964..969) /gene="RAX2" /gene_synonym="RAXL1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(805..807,814..816,934..936,943..948,955..957) /gene="RAX2" /gene_synonym="RAXL1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 808..966 /gene="RAX2" /gene_synonym="RAXL1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
tttagtagacagggttttgccatgttggccaggctggtctcaaactcatgatctcaggtgatccgcccgcctcagcctcccaaagtgctggggttacaggcgtgagccactgcgcccggctgtgaatggtgaacttctattcatacctcaagacccagctaaaagggtccctaccccttgtgtccagaggagccaactgcagtgccttcacctctggacctcagcttccccaactgcctctgacatctgtgagttctaagacacatttttctgcccccagcagataaaaatattaacagtgggcattcattaagtgccccctgtatgccaatttctgtgcgatgctctgagaagctgaaatccccccagggtaggtcctagtgtggcagttttacagccagggaaactgaggcccagagagggagaggcccttgccgtcttatggcaaggggccgcggagcctgtaagactatccccccagccacccacttagagccccagccctccatccaccctgccctccctcctggctcagaacagcccaggaccaagtgggaggggccgcctcaattaatcaccttgagctaatcctcccccacgcagccccgacctggctcggctccggcagggccaggccacagcagacgcagcgccgggcccgctggggcaggtgtcccgtggaaatcgacggaggggctgccgtgggcggtgggagccatgttcctgagcccgggcgaggggccggcaaccgagggtgggggtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctctcactacccggatgtgtacagccgtgaggagctggcagccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagctccgagactccccgaggccccagcgctgccgttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttgctcccaccttcgcagatggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctatggacagggcctggccgccagcctgagcctgccgccctcccgggccccctcctcggcccaacccgagaaccagggacgtgccctggtgacagtcaccatgccttggcctaggccgaggtcatggagcaactgtggtcaggccaggccaccaccactggggagcgggaccagagagacaggctgctgggttccctgcccccatcccgtctcccaccccatcgccacccatcctgctggcagcggactggcccccagtgtcaggcaggaggtgacccaagtattctcaggccaggtgcggggacctcctcccctcctggggcctcagcctcctgtctgttaattgggcgtgggggcctccgaggttcgagggctgcgaggctgtgggtggcgggaccgctgactctgtaagatgagtgtaaatctctctgcttctcctaatccccatcagcagagctgcccactctccaggctcccagtcccctggaaataacaaatagcagcagctcccgcgagcctggtctcctctcaccgtgtgctcgccatgtgagcgctcccctctccgttgtgccctggacctcgggcacagctgtcagcccattctacagagagggaaaccggggcttaggcaggaagccaggtccccaaagtcgcacggccaggagtggatggagctgcctttcagacccatcaccggtcctaccgtccggggcacagcgacaggttctggagagagggtgggtcccgggccaggtgctggtgggcctccaggtggaggcgggctgatgctgggtgtgtcgtcatcgtcagcccgttcctcacgtccccacagaccccaggccctgtgcatgtccccagtggaggcatggccagcatctgctctgtccaacccagtcgcatcgctcaagagctctgagcaaggaggctgtcgcggggccgagaacccgctgggactggcaagcacggctggcccagtgcagcaggagggggccctgagccatgggatgggacagtctgggccagcgccaccttccgagacagaagtgcggcaccagggcaggagctgcagtagctaccctccccgtctccagcctgggctccccagatcactcccagatcaccagggcaccccatctctaggcggcacctcacacaccagtcctgtggtccaacgcccagccatcacccaatgtcaccgcacaccaggcagtggggacgcggcagtaagcacaagaaagatttttttttttaaagctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggaggctgaggtgggaggattgcttgagacctgcctgggtgacacagcaagaccccatctccacaaacgtttttaaaatgtgccgggtgtagtggtgcacacctgtcatcccagctacccaagaagctgaggcaagaggatcacttgagcccagaaggttgaggctgcagggagctgtgatcacaccgctgcactccagcctgtgcaacagagccagaccctgactcaaaacaaataaaaaacaaatctaaaacaaaagacttcagacagtgataagtgatagggagaaaaaaaacccaggaaagtcagatgtggagtgtggcaggggctgcaattttaatagggagttctggaggaggggaggctggcgtgaaggtagagaccgggggcgggagggagaatgtct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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