2024-05-04 23:55:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009252600 2396 bp mRNA linear PRI 11-APR-2023 DEFINITION PREDICTED: Pongo abelii retina and anterior neural fold homeobox 2 (RAX2), transcript variant X1, mRNA. ACCESSION XM_009252600 VERSION XM_009252600.3 DBLINK BioProject: PRJNA944618 KEYWORDS RefSeq. SOURCE Pongo abelii (Sumatran orangutan) ORGANISM Pongo abelii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_072004) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Mar 23, 2023 this sequence version replaced XM_009252600.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_028885655.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2396 /organism="Pongo abelii" /mol_type="mRNA" /isolate="AG06213" /db_xref="taxon:9601" /chromosome="19" /sex="male" /tissue_type="fibroblast" gene 1..2396 /gene="RAX2" /note="retina and anterior neural fold homeobox 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 Proteins" /db_xref="GeneID:100436730" CDS 192..884 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X1" /protein_id="XP_009250875.2" /db_xref="GeneID:100436730" /translation="
MPAPVEGTDFPGAGRQAWGSPALCLPVAPPAVSPPSVPLPSRQVGAMFLSPGEGPAAEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPQAMPGLPRLLGPGPGLQASFGPHAFGPTFADGFALEEASLRLLAKEHAQALERAWPPA"
misc_feature order(411..425,429..431,480..482,498..500,537..539, 543..548,555..560,564..572,576..581) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(417..419,426..428,546..548,555..560,567..569) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 420..578 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
agacacggcgccgggcccgctggggcaggtgcctcgtggagatcgacggaggggctgccgtgggcggccatgacagccacagagaggggaaaacagggacggtgacacacacagagagaaggaagagcagacagaggcacagcaggagacccccccaagcccgaggaggacagcccggggatgcagagcgcatgccggccccagtggagggaacagatttccccggagccgggaggcaagcctggggctcccctgccctgtgcctgccggtagcccccccggccgtctccccgccatctgtcccgctgccgtcccgccaggtgggagccatgttcctgagcccgggcgaggggccggcagccgagggtgggggtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctctcactacccggatgtgtacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgtcgccaggagcggctggagtcaggctcgggtgccgtggcagctccgagactccccgaggccccagcgctgccgttcgctcgccccccggccatgtcgctgcccctggagccctggttgggccccggaccacaggccatgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttggtcccaccttcgcagatggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggaaagggcctggccgccggcctgagcctgccgccctcccggcccccctcctccgcccgacccgagaacccgggacgtgccctggtgacagccaccacgccttggcctaggcgaaggtcatggagcaaccgtggtcaggccaggccaccaccactggggagcgggacctgagagacaggctgctgggtcccctgcccccatcccgtcccccaccccatcaccacccgtcctgctggcagcggaccggcccccagtgtcagggaggaggtgacccaaatatttctcaggccacgggcagggccctcctcccctcctgaggcctcagtctcccgtctgttaattgggcgtgggggcctctgaggttcgtgggctgcgaggctgtgggtggtggggccgctgactctgggagatgagtgtgaatctctctgctgctcctaatccccatcagcagagctgcccactctccaggctcccagtcccccggaaataacaaacagcagcagctcccacgagcctggtctcctctccccgtgcacccgccatgtgagcgctcccctctccgttgcgccctggacctcgggcacagctgtcagcccattctacagagagggaaaccggggctcaggcaggaagccaggtccccaaggttgcagggccaggagtggatggagctgcctttcagacccatcaccagtcctaccgtccggggcacagcgacaggttctggagggagggtgggcccgttgtgtggaggcgggctgatgctgggcgtgtcgtcatcgtcagcccgttcctcacgtccctacagaccccaggccccgtgcatgtcccctgcggaggcatggccagcatctgctctgtccaacccagttgcattgctcaagagctctgagcaaggaggctgtcgcggggccgagaacccgctgggactggcaagcacagctggcccagtgcagcaggagggccctgagccatgggatgggacagcctgggccagggccaccccctgggccacagaagtgtggcaccagggcaggagctgcagtagctaccctccccgtctccagcccgggctccccagatcactcccagatcaccggggcaccccatctctaggcggcacctcacacaccagtcctgtggcccaacgctcagccatcacccagtgtcaccgtgcaccaggcactggggacgtggcagtaagcacaagaaagatttttgtttttaaagctaaaccaggccaggtgcggtggctcacacctgtaatcccagtgctttgggaggctgaggtgggaggattgcttgagaccagccggggtgacacagcaagaccccatctccacaaacatttttaaaatgtgccaggtgtagtggtgcacacctgtcatcccagctacccaagaagctgaggcaagaggatcgcttgagcccagaaggtcgaggctgcagggagctgtgatcacaccgctgcactccagcctgtgcaacagagccagaccctgactcaaaacaaataaaaaacaaatctaaaacaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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