2024-04-24 13:53:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_007250367 1926 bp mRNA linear VRT 21-JUL-2022 DEFINITION PREDICTED: Astyanax mexicanus vimentin (vim), mRNA. ACCESSION XM_007250367 VERSION XM_007250367.4 DBLINK BioProject: PRJNA853366 KEYWORDS RefSeq. SOURCE Astyanax mexicanus (Mexican tetra) ORGANISM Astyanax mexicanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064413) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 21, 2022 this sequence version replaced XM_007250367.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Astyanax mexicanus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1926 /organism="Astyanax mexicanus" /mol_type="mRNA" /isolate="ESR-SI-001" /db_xref="taxon:7994" /chromosome="6" /sex="female" /tissue_type="muscle" /dev_stage="adult" gene 1..1926 /gene="vim" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 85 Proteins" /db_xref="GeneID:103044141" CDS 136..1503 /gene="vim" /codon_start=1 /product="vimentin" /protein_id="XP_007250429.3" /db_xref="GeneID:103044141" /translation="
MASRTTRQSSSYTRMFGAERPGTAGSSYSIARYSSPVRSTRMTYSASSAPAIVSVSRSSRLRSAPSPRLGSGTLDFALSDAINTEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQNKSLSAELELLRGKGTSRVGDLYEEEMRELRLQVDQLIGDKARVEVERDNLGEDIQRLREKLQEEIIQREDAENNLHGFRQDVDNASLARLDLERKLESLQEEIIFLKKLHDEEIAELQAQIHDQHVQIDMDVAKPDLTAALRDVRSQYETLATKNIQEAEDWYKSKFTDLSDAAARSSEAIRLAKQDANEYRRQVHALTCEVDALKGTNESLERQMRELEDSFGMESSGYQDTIVRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIITPMPNISSINMRETMLDSRPMIENLTKKVVIKTIETRDGHVINESTKHHDDLE"
misc_feature 160..408 /gene="vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 409..1335 /gene="vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 1926 /gene="vim" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aagcgggctcaggctgcggggtttgatctgctggggaaacgctctctcgggctgtttacagtaaccggggcgttttcactgcttcacagactcacagactgccgctgcggctctatcaggactatcttctccagcatggcctcccgaaccacccgccagtcctcctcctacaccaggatgttcggagcggagcgcccgggaacggctggctccagctactccattgcgcgctactccagcccagtgcgctccacccggatgacctacagcgcctcctccgcgcctgccatcgtctccgtcagcaggagcagcaggctccgcagcgcgccctctccgcggctcggctccggcacgctggacttcgcgctgtccgacgccatcaacaccgagttcaaggccaaccgcaccaacgagaaggccgagatgcagcacctgaacgaccgcttcgccagctacatcgagaaggtgcgcttcctggagcagcagaacaagagcctgagcgcggagctggagctactgaggggaaagggcacctcccgggtgggagatctgtacgaggaggagatgagggagctgcgcctgcaggtcgaccagctgatcggggacaaggccagggtggaggtggagagagataacctgggggaggacatccagcgcctcagagagaagcttcaggaagagatcattcaaagggaagatgctgaaaataacctccatggcttcaggcaggatgtcgataatgcttccctggctcgtctagacctggagcgcaagctggagtctctgcaggaggagatcattttcctcaagaagcttcatgatgaggagattgctgagctccaggcgcagatacatgaccagcacgtgcagattgatatggacgtggccaagcctgatctgaccgctgccctgagggatgtccgctcgcagtatgagactctggccaccaagaacatccaggaggcggaggattggtacaaatccaagtttactgatttgtcagacgctgctgcccgcagcagtgaagctatccgcctggccaagcaggatgcaaacgagtaccgccgccaggtacacgctctgacctgtgaggtggatgctcttaagggcactaacgaatccctggagcgccagatgagagaactggaggacagctttggcatggagtcatctggataccaggacaccattgtccgcctggaggacgatatccgtaacatgaaggacgagatggctcggcacctgcgcgagtaccaggacctgctcaatgtcaaaatggccctggatattgagatcgccacctataggaaactactggaaggagaagagagcaggatcatcacgcccatgcctaacatctcttctattaatatgagagaaaccatgctagactccagaccaatgatcgaaaaccttacaaagaaggtggtgattaagactatagaaacaagagatgggcacgtaattaatgagtccactaagcatcatgatgatctggaatgaaccgcatgtgaatctgtaaagaacaggacagttatagagcactgagggggagtgcactgtagccggatgccatatagaatgtggagtttttctgttgtttccgtgagagttaaacaaacaaacaattaaaaacagctttaaagtgccttttgcgataatagaaagaaagatctgcagactgagttgtgtttctgcaaactgtaggccagtgagaaaaccagctttaccagtattcctgtttaccacatagtttacactgtacaagcaagaccacagcaataatctgagtgactacttttctggtttgtatttgttattgaaaattgaccaaagtctaggagaatgaactgatgacttgtgtacacaataaaacatcaaactgtcaccgctttcactaaggcaataaatctttccaaaacgaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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