2024-11-01 09:59:01, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_007144500 2020 bp mRNA linear PLN 12-MAR-2014 DEFINITION Phaseolus vulgaris hypothetical protein (PHAVU_007G166300g) mRNA, complete cds. ACCESSION XM_007144500 VERSION XM_007144500.1 KEYWORDS RefSeq. SOURCE Phaseolus vulgaris ORGANISM Phaseolus vulgaris Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus. REFERENCE 1 (bases 1 to 2020) AUTHORS Schmutz,J., McClean,P., Shu,S., Cregan,P., Rokhsar,D. and Jackson,S. TITLE Direct Submission JOURNAL Submitted (02-APR-2013) US DOE Joint Genome Institute, Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_023753). FEATURES Location/Qualifiers source 1..2020 /organism="Phaseolus vulgaris" /mol_type="mRNA" /cultivar="G19833" /db_xref="taxon:3885" /chromosome="7" gene 1..2020 /locus_tag="PHAVU_007G166300g" /db_xref="GeneID:18626115" CDS 130..1863 /locus_tag="PHAVU_007G166300g" /note="encoded by transcript PHAVU_007G1663001m" /codon_start=1 /product="hypothetical protein" /protein_id="XP_007144562.1" /db_xref="Phytozome:Phvul.007G166300.1.p" /db_xref="GeneID:18626115" /translation="
MMKNQPSQWWWLESHNNTRRSPWLQSTLTELNEKTKAMLKLIEEDADSFAQRAEMYYKKRPQLVSMVEDFYRTHRSLVERYDQVTGIRQQKTGGSPFSPLKHHQPEKLMSFTDDNYDSYYESCDVEESGESEIDDPEQEEEEDTKFNNNAELEEVQFVAANDVMEIERLGEENKDHNDHNKQKYNIYEAVMLREEIEQLRKENRVQKDELNPKSIICGELLMLREEIGRLGKENRAEKDELNQKDIICGEAMMLREEIEQLGKENRVLKDEINQKSIICGEVMMLREEIEQLRKENRGQKDELNQKDIICGEAMLLREEIEQLGKENRVLKDELNQKSIICGEVMMLREEIEQLRKENREHKDELNQKDNICGEIMMLREEIEQLGKENGALKDELNQKYIICGEVMMLREEIQQLRKENRGQKDELDQIDINSEVTMSREEIEVYIKENRVKNDELKPKGNVCGEVVMLREEIERLRKDERAQKSTLCGEVMKLKQENSAQKDHLKKKDQEKIEVIRHLSLAIDMLKQENVKMRSFIAKESTNKWKNPFGFKNFMGSLSGQLFNGLTKNQPSLVAL"
misc_feature 154..375 /locus_tag="PHAVU_007G166300g" /note="KIP1-like protein; Region: KIP1; pfam07765" /db_xref="CDD:429647" misc_feature 706..1476 /locus_tag="PHAVU_007G166300g" /note="Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; Region: COG1340" /db_xref="CDD:440951" ORIGIN
tgaactctatttccatcataggcggtggtggcaagcatagcattaattcatctcagattttttctctttcttcttcttcttccatgctcttggtgttcgtgataacatagataactgaggagggctaaaatgatgaagaatcaaccgtcacagtggtggtggcttgagagccacaataacacaagacgatccccttggcttcaatccactctcacagagctaaatgagaagacaaaggcaatgttaaaactaattgaagaagatgcagattcctttgcccaacgtgcagagatgtattacaagaagagaccacagcttgtgagcatggttgaagatttctataggacacatcgatcattagttgagcggtatgatcaagtcactggaattcgtcagcagaagactggaggatcccccttttctccactcaagcatcatcaaccagagaagttgatgagttttactgatgacaattatgatagctattatgagagttgtgatgtggaggagtctggggaatctgaaattgacgatcctgagcaagaagaggaagaggatacaaaattcaataacaatgcagaactggaggaagttcagtttgtggctgcaaatgatgtgatggaaattgagagacttggtgaagagaacaaggatcataacgatcacaacaagcagaaatataacatttacgaagcagtgatgttgagggaagaaatagagcaactcagaaaagagaacagagttcagaaggatgaactcaacccgaaaagcatcatttgtggtgaattgttgatgctgagggaagaaataggacgactcggaaaggagaacagagcggagaaggatgaactcaaccagaaagatatcatttgtggtgaagcaatgatgttgagggaagaaatagaacaacttggtaaagagaacagagttctgaaggatgaaataaatcagaaaagtatcatttgtggtgaagtaatgatgttgagggaagaaatagagcaactcagaaaagagaatagagggcagaaggatgaactcaaccagaaagatatcatttgtggtgaagcaatgctgttgagggaagaaatagaacaactcggtaaggagaatagagttctgaaggatgaactaaatcagaaaagtatcatttgtggtgaagtaatgatgttgagggaagaaatagagcaactcagaaaagagaatagagaacataaggatgaactcaaccagaaagataacatttgcggtgaaataatgatgttgagggaagaaatagaacaattgggaaaagagaatggagcgctgaaggatgaactcaaccagaaatatatcatttgtggagaagtaatgatgttgagggaagaaatacaacaactcagaaaagagaatagagggcagaaggatgaactcgaccagatagatatcaatagtgaagtaacgatgtcgagggaagaaattgaagtatacataaaagagaatagagtcaagaatgatgaactcaagccgaaaggtaacgtttgtggtgaagtagtgatgttgagggaagaaatagaacgactcagaaaagatgaaagagcacaaaaaagtaccctttgtggtgaagtgatgaagttaaagcaagagaatagcgcacagaaggaccatctcaagaaaaaagaccaagagaaaatagaggtaataagacacctgagtttagctatagatatgctgaagcaggagaatgtaaagatgagaagcttcattgctaaggaatctaccaacaaatggaagaatccgtttggatttaagaatttcatgggatcattatcggggcagttgtttaatggacttacaaagaatcaacctagtcttgtagctctctagataaggttcacagagtaaatagctaagttttgtagaacaatattagaagagacctatgtacatgtcatggggacttgctcgagtaacctacagatcttgtatacagtttagtatattcctaacaaatccgagtctctagtggatttcctttgcactt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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