2024-04-23 15:26:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005678708 8772 bp mRNA linear MAM 08-SEP-2016 DEFINITION PREDICTED: Capra hircus argonaute 1, RISC catalytic component (AGO1), transcript variant X2, mRNA. ACCESSION XM_005678708 VERSION XM_005678708.3 DBLINK BioProject: PRJNA340281 KEYWORDS RefSeq. SOURCE Capra hircus (goat) ORGANISM Capra hircus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030810.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_005678708.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Capra hircus Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8772 /organism="Capra hircus" /mol_type="mRNA" /db_xref="taxon:9925" /chromosome="3" /sex="male" /tissue_type="blood" /dev_stage="adult" /breed="San Clemente" gene 1..8772 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 71 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns" /db_xref="GeneID:102180718" CDS 351..2924 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_005678765.1" /db_xref="GeneID:102180718" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKALTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 450..842 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 870..1022 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1023..1385 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1179..1181,1224..1226,1266..1268,1278..1280, 1332..1334,1353..1355,1359..1361) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1518..2795 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1929..1931,1941..1943,1977..1988,1995..1997, 2019..2021,2028..2030,2040..2042,2052..2054) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2133..2135,2139..2141,2349..2351,2763..2765) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
gatgggtgaccgccaggggccgctgcctccggtccccggtgcccccgcccctctccattggcctttgttgccgtcggagcgccccgtttgactcgttcccgtccgccccctgggcctggcggtcgcgcctgcgcactggcagctggccgggcgctcgcagggggagctgctgcaggctccgcggcggcggcggcaacggaggctgcgggggcggcggcgcgagcggccgggcttgggggggcagccgagcccggcccgggagcccaggcagcaaacgtgcggggtacctaggcccctcacgctggactccacagtctccgggccgcctgatctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcaggtgcctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaagccaatcaagctcctggccaattactttgaagtggacatccctaagattgacgtctatcactacgaagtggatatcaagccagataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatatttggtgaccgcaagcccgtgtatgatggaaagaagaacatttacactgtcacagcactgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaagtggctggccattgtgagctggcgcatgctgcatgaagccttggtcagtggccagatccctgttcccctggagtctgtgcaagccctggatgtagccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcacagccagtgattgagttcatgtgtgaggtgctcgacatcaggaacatagatgagcagcccaaagccctcacggactctcagcgtgtgcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacaaatgaagaggaaataccgcgtgtgtaatgttacccgccgtcctgccagccatcagacgtttcctctgcagctagagagtggacagactgtggagtgcacagtggcccagtatttcaagcagaaatataacctgcagctcaagtatccccacctgccttgcctgcaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacttcaaccatgataaaggctacagctagatcggccccagacagacaagaggagattagccgcctgatgaagaatgccagctacaacctagatccgtacatccaggagtttgggatcaaggtgaaggatgacatgacggaggtgacgggacgagtgctgccggcgcccatcttgcagtatggcggccggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaacggcattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaagtgctcaagaacttcacggaccagctgcggaagatttccaaggacgcagggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcagacagtgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgcccgggaagacgccagtgtatgctgaagtgaaacgtgttggagatactctgttgggaatggctacacagtgtgtgcaagtgaagaacgtggtcaagacctcgcctcagactctgtctaacctttgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgcagtctttcaacaaccagtgatattcctgggagcagatgttacacacccaccagcaggggatgggaaaaaaccttccatcacagcagtggtaggcagcatggatgcccaccccagccgttactgtgctactgtgcgggtgcagagaccacggcaggagatcattgaagacttatcctacatggtacgtgagctgctcatccagttctacaagtccacacgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagcttccccagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcccggaatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttatgtacgatgcacacgctccgtctcaattccagcacctgcctactatgcccgcttggtggctttccgggcacgataccacctagtggacaaagagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccgcccaaatccagaggaagcagggaggagggaggtggggtagggaggaatgcagaaggccctgtttccttccgcagagggggcaaaagggtggggaacagggccagtaagccagaccaccagccagaaatctctgatattcacctcatgccctcaacccctcaccccatcttgtcccatctggccctgaacccactggaccaagagaggcagcagcggtgcccaccatacacacagtgtcccatgtgactcacagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccctgtggacaaaagctggtaggtttgggtttgatactttagatggaagagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaagaaaaacgaaatcagatgcagatcaatattttaggatactagatgttttaatgggttgagaatccagcctgtaggaagatttttaatgctaatgattttggttgcccctcccccagctgccactcccctttcccttattcctctttctccactttttctaccccaccttacacctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaatggtaatgctgcagaactgcaaccttttgtaccttttggggggtgggggcggggtgggggtgggagaggaggtaggttgggatgaaataccctgtacccaacacgcctccagccagagcgccagctattttgcatttgaaggaattgacttccatattcattgagcttttaaaaagatcacgacctcaagatggttaaaatccattgacatttgcactttcagacgtgacaagtctaggagctgctgagatgactggcccctggccacttatgtctcctttcttcttgtccccgctttctccccacctgcctgggtctggagttaactttcatagcatttctcactcttggcttcttttccctgatggtcaagcctctttatgtttcaatattttttaactggggtgacttacaacagatgatctttaggtctaaaataaggggggaaaaaaagcaaaaactaaatgttatttttataccataacctgagtctgttgccaaaatctggaaataaatccctcccatgcccagtgagtttacatcccagaaacattgagccatcaaaggaactatgtacctgacttgttctttggcctgctttggcttggctctgtagggtgtggttatctccacatgtggggctcaggctccaccttttgtgcacataatacctttctcttgctgcaggcacctctgctgcactgccctgcactcttcctgcaagcgcgtctccttctctggactatcttctgatgcttggcttatcccagatttcagcgtgtcctgtggataggctgggggattttgctgctccctattgcttctgtttacacaaatgactttttcctgatttcccactagggcatgtgagtggatggcatgggctttttttttctctttttttcctgtcttcctgggtagagatggggtttggctgtcttgcagaactggaaaagtagggggttctagcttggggcctgttggccttgaagcaaggcttcctctttcctcgactgttccttttttcctgtcccactgcttgggatgaggagttgcagcttcagtgtggaaattcctctttttgaggagcctgggcttgggtttaccccaatctggtgatgaagccatgactctttagacctagctcaggctcaaggccagccagcagaaggttggtctgaatatgggcctatgcagtagagctaccatttcccctccccagcagcgcttgtacagacccagatttgctatgcaaaacagtctatcccaggttctgttctggttggctactttgttcagcaacttcacaaaacgtagcacaaacattgattatagagaaggcatcaggactgttgagtaactcttcctatacttctttcctactggcaacagtatggggtgccctgtgggcacagcccagctgaaaactgaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaagagagtgatgccaacactcccatctgccctgtccatcgccttcatatattgtctacttcgtgtttagtcacccttcagggaggggagctttcttgggacagtgggctctgagggttctcttctcgggtgcgttttggggctgggatcagggcagtattcctggaaggtccagtcattcaccagcatttgcaaatgtccattgagagctggtggtagccacctactctcagcaacaagtttgtgttctctcctttttctctctttgcctcactctctccagttgggtcttgagctgaggcttggcattttttagcccttaggcatttacatgccatttaataaataaaagaaacagcttgggcaatggcaagaacatgacatcttgctgtgattttctttctttctttctttctttttatctttgagacttgaaaaacacccttaaccttgaggattcttcttcttcgaaaggtagtgcatgcagattgagaagtgttggcaacaagcttggctttctttgatttggttaaagtggtgctttgtccttaggctcagaggaagtggctggggagaccctagcctcatcctcttagacaagtctcctggtccctttgttctattcttttgccttccttttcctcctctctctttccctggccttgttctatttttttctgttcattcagcttgcttgctggcctgcctgcctatctgcctatgtgatgatgaattctctgcatggctacaatgatcccactgttagctggcaaggtcaggcttagctccttggctgcagaagaccaagaatctgcttcccaagcctagtgatgtccttcctgggttggaccacccttaaacttatgtgaaggtgtagcagaaggcctgcccatctggcatgaaatcaggaaggcttctggcaacttccacatctgtccactctttggagttggtttctcttgttgctttttctagatctggtttcatttctctctacctggggcttcccttttctgagggtgtcctagcattgacctttttggctatccagggttgaagggttaggggatagacgtgggggaaggagggatgggaagagaatggagagaatttggctgaaacatgggaaaggagagccctgctcactgatcacttttctagtccagcctgactcattggggccgaggtgctactgctggcctctggggataagcatgaggctgttgttgctaggaacttaggattaaattaatgttgaaaaagaaggtaactaaaagtgtgaaacctccctgaaaagctcctggttcccatctactcagtagctcctttatagcctcctctttggctaagcaatgatgtttttggatagttttctttttctgtccagaattctgtaaatgatgccagcacaatgggcagccaaggggacgcaatgatttctcacctgacccataggatatctgcaaggctagtgggacaatgttttagacttggcattatgtgtaacaaagaaaggtgaatgatccttccccttcagggtagaaagtcatctcaaactgactaagatgcagttttggaaactacatcagggggaagttatttttatttatatttgctgggccacggccaatcctggatggtagctgggatgccttccttcttaaaagtctgatcatggcagggttatgcagggcactctttcctctttggccttctaagctgatcagggagaagggattctctggttttctcttctctcccatttattaggacttgccttctccctgggcagggagagaggctaggttggtgctctccccttactctactcctactgacttagaacctctggctgctgtttgggagcccaagaaaggtggtggaggcagtgggctcaaaacaacaacaacaacaaaacagaaaaagttgaggaaaggcagatttccttctttaaaaggaaaataggaaaccctccaaggattgtgcaaataaagacaatgtgtcaaatgcactgactcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtgcacacagtccaacctgattggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttaatttctaaactttttatcctctcaagtccagcatggatggggaaatgtccctggagccccacagctgtgtacttgtttgcatttgtttccctatgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtaaaattatcccagcagctgtaatgtacagtttcttctgaagcaagcaacagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaagtgcggtctctctctcttttttcttagcaaagcaaactgttgggattaattatatctctgatagattttacattagaataatagattgtgagaagagcagaatcatcactttctaaaggagtaaagtgggtaaaacaaattccagagtgttgaaactgccaattatatgtaatcatttcacagggtttccatttattcttcattcagcaaacttgtaaagcactgtgtctagcagtttttgttggcacaattcaaaaatgaggaaaacagtgtttctctccttaaggagcctaaaaagtttggttggggatgtgagtagcccaatggttctttggcaccatttagagagattatgaggactgggaaaaaggctataaggctgcagcaatgaagatcgaaaggaaagagcaaataggagagacactcaggaagtaaaattaataggactctggatgatggaatgggaagaacgaagtagaggctaacatccactttgcttgagcaagtgagtatgttgggacgttcctctaagccaagattgcgggaagggagactgtagaaggaaggtggtgaattttgtgaagaaagaccattaggcttttatagactgagttttgaggttcccaggtttccagtaaacatttatattttggtcctcagggaagactccaaaactacagttacagatatgagattcataatcatagagatgctagttaaagccatagtaatgaacaggatggcttaggaaagagtagggcaagagaaacctagtgtacaactctaggaaacaagagatcaggaaatagaacctaagatgactgtcgcatcactcctagagagcgtgtatggttttgactgatttaatgaggtgggaggatagtgaggagagtggaataggattcaacaacgacatgattaacagcaggaaaactgctgcggtgaggcggggggtgttattttctatttactttaccatccttcactccatcttctctggcatcttgtaactatatggtcattctccagtttttcttgaaaatgagcattggaaaacctaacttaaaccaggctaagacggagacttccaagtcattcacagccaccaccaccactacctccacctccagcttcctcctatcctcaggagatacttgtgaaacaataaaataaacaaacctaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]