LOCUS       XM_005668107            2834 bp    mRNA    linear   MAM 13-MAY-2017
DEFINITION  PREDICTED: Sus scrofa vimentin (VIM), transcript variant X2, mRNA.
ACCESSION   XM_005668107
VERSION     XM_005668107.3
DBLINK      BioProject: PRJNA28993
KEYWORDS    RefSeq.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_010452.4) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 13, 2017 this sequence version replaced XM_005668107.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Sus scrofa Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /isolate="TJ Tabasco"
                     /db_xref="taxon:9823"
                     /chromosome="10"
                     /sex="female"
                     /breed="Duroc"
     gene            1..2834
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1247 ESTs, 18 long SRA
                     reads, 5 Proteins, and 98% coverage of the annotated
                     genomic feature by RNAseq alignments, including 173
                     samples with support for all annotated introns"
                     /db_xref="GeneID:100522394"
     CDS             1200..2483
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin isoform X2"
                     /protein_id="XP_005668164.1"
                     /db_xref="GeneID:100522394"
                     /translation="

MSTRTVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRGYQ"

     misc_feature    1218..1502
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:461414"
     misc_feature    1503..2429
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
ORIGIN      

ccggcgtttggcggttacagagcctccgcggaagtttcttactaaagagaagccagcatattggagcaaaatctggattgggcgcgttcctaagaatttaggagcgctctagactccaaaccagcgaacggcacataagaaagcagagcccagctcgaagttgggtaaaacttagaaccaacagtactcgcacagtggcccggggagacgaaagtcaatctcgtctaacggttttcctgaaccgctaggactcctcaacctcggtggcgggacagcagagcgcagtgactcactgccagtggtgactcagcgaccccacccatctcccctgggctttccttggccacttccttgcagctccttgtccaaagccgggcccagccggttaggtccctgaacaggaactcctactacaggaggacgaggaaagttggggccggattggtcccgctgtccaagcaggcgtgcgcaaggctgcgcagagcccagagccctgcgccccgggctgtgcgcgcccccacctcgcgctccaatctcaggccctctttgtttctttctccacgccttccgatctgctggatccctcactcctctcttccggctcctttacccgcggggcccccccaccctcgcgcttccaggcgaccgcagccaaggggccgcgcgcccctcccacccgcacgcttcctcctacgcctccctagctggctgggtgcccgggacccttgtggttcagtctagggagggctcccccatcaccgcgggacccagcctttttcatcacccagaggtgagcacacctcaggccatcctcaggaaagccccaaaagttccagttcagcctccaagttactgggggactgagcatagtcccggttgcggaggaggggggaggagggaggctcccgggctcccccgccccaaaccccaggccagccttcccgcctctcgccgggtccccattggctggcgcactccgccgccgggatggcagtgggagggaacgctccatcctaaggcggttataaaaactgcgccctcggcggggtcccgtcctctgccactcttgctccggggtccccgcgccagagacgcagcagcgctccctttgcccacacccaccgctccctcgctcgcctctcctcccggagccagtccgcgccaccgcagccgcccagcccactgccacctctgcagccatgtccaccaggaccgtgtcctcgtcctcctaccgcagaatgttcggcggccctggcaccgctagccggccgagctccagccggagctacgtgaccacgtccacccgtacctacagcctgggcagcgcgctgcgtcccagcaccagccgcagcctctacacctcgtccccgggcggcgtgtacgccacgcgctcctcggccgtgcgcctgcggagcagtgtgcccggcgtgcggctgctgcaggacgcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagattctgctagccgagctcgagcaactcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaatctggccgaggacatcatgcggctgcgggagaagttgcaggaggagacgcttcagagggaggaagccgagagcactttgcagtctttcagacaggatgtcgacaatgcttctttggcacgtcttgacctggagcgcaaagtggaatccttgcaagaagagattgcctttttgaagaaactgcacgatgaggaaatccaggagctgcaggctcagatccaggaacagcacgtccaaatcgatatggatgtttccaagcctgacctcacggctgccctgcgtgatgtccgccagcagtatgagagcgtggccgccaagaaccttcaggaggcggaggagtggtacaagtccaagtttgccgacctctccgaggctgctaaccgcaacaacgatgccctgcgccaggccaagcaggagtcaaatgagtaccggagacaggtgcagtctctcacctgtgaagtggatgcgctcaaggggaccaacgagtctctggaacgccagatgcgggaaatggaagagaactttgccgtggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggctctcgacattgagattgccacctacaggaagctgctggaaggagaagagagcaggatttctctgcctcttccaaatttttcttccctgaacctgaggggttatcaatgaaacttcccagcatcacgatgatctggaataagaactgcatgtactctgtgcagcgaaatattaccagcaagaataaaaaagaaatccgtatcttcaagaaatagctttcaagtgcctttctgcagtttttcaggagcgcaagataggtttggaataggaataagctctagttcttaaaaaccaacactcgtaaaagatttaggaaaaaagtttacaacataatctagtttaccgaagaagccttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccatcaaatatctgaccaacttgtttctgcttcaataaatctttggaaaactc

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