2024-04-29 10:32:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005041120 6349 bp mRNA linear VRT 20-APR-2016 DEFINITION PREDICTED: Ficedula albicollis testis and ovary specific PAZ domain containing 1 (TOPAZ1), mRNA. ACCESSION XM_005041120 VERSION XM_005041120.1 DBLINK BioProject: PRJNA208061 KEYWORDS RefSeq; includes ab initio. SOURCE Ficedula albicollis (Collared flycatcher) ORGANISM Ficedula albicollis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_021673.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ficedula albicollis Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..6349 /organism="Ficedula albicollis" /mol_type="mRNA" /isolate="OC2" /db_xref="taxon:59894" /chromosome="2" /sex="male" /country="Sweden: Oland" /collection_date="2009" gene 1..6349 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:101819662" CDS 1..6240 /gene="TOPAZ1" /codon_start=1 /product="testis- and ovary-specific PAZ domain-containing protein 1" /protein_id="XP_005041177.1" /db_xref="GeneID:101819662" /translation="
MWSDLMLMDESPKEEKTQQVVLRLHTQYVSHPDTIKQTKIDGELLKRCARRKEYGITQGDGTPNSMGEPVCSPTRLRARGESGLPTGSGSSTRGVGARIGGRGQRVKEGESGEAAREAAAFSSVERLSGASLKCSALPVPVQKEQDENRQKFPGKKIKGIQHRKSPSRSKSVGSAVSDTAECEDWQAAATAMCWEETLRGTGQSQQLFFSGTTLQSKFSAGSQRYEYFSEDLKFSGYHKSSRNSGKEGNRSCMEIKLEVPSLKREIGGTEKHGISCFPEPGGLPPKKVAWSTEVKCTDSIMMQNMQISDFRKNLGTQETVPEPKPQQEVDMPERLNGCELVGSRTLGTQKKEKRCLDKKGRRPVVKPKVHGPKEGDGSALLEQHTQCPESRKGALSMRNRNTLLSQQLQDLSGQEQPTTRRRKHCMKKEQQNSSSQKGPDDSGESAEEQLKAIEQDSGTSQAVKKVKTKQNRAEGSKEKESHYSRSFAVSTSGDTESNDFLCHTVTKEPDVQCRKRQRRSGQIRHLHSLSVTAAEKVINTSAKCDAEHCNNALNHCSGLLGATDKNPFVILEDCSYINTLVKPSGSGATNSYKLNGFFRVAHGSKDLNDRICNTGGMQNERSLVKGGLSSNEEKNENEEGCVTCCLSESSKCLRGKKWNIGRKPRKKMKITEKSADVASKCKKCELETEAAVAMSSCFAVSGLNHILSASCDHTSAFDAEKNTHEVQTVSAWRKNNTKLLAFETGFKKTPELSVLVKGENSSSVAHYAAASDSLRVLAQIHDVSDRHKNKTGGNLNKVNRKLQQFTCQRTIPMAGKKVWPIESCARTSEWFLKNRRSISEGEGISKAAFEDFSDKSSVKAVGHSAVTGNVRQLDLHTSLAEITKEITHKKIDPNIDCQASLEATESSSVGIYETWTMGNENGESPVNTDRSAVAFNHDNVQEVKATLNFTAKQKDENEGDITERNLSVTVQNGTSKQTNKNEGGVTNRNLPAKVKSDTTKQKDKNEGDMTNRNLVATVQNGATEQKDKHEGDVTNRNLPANVQNDTCTSNTNSINFSPKVSVVKQTFSDLNLIKPLTSGKFEVPLCRKKSESKKRESVHSFESKTCSPLELPESTSPGRQKTGGETFLLKSEECPLSVMSDATSPASIQTKADENDSKDFQHSGSVNLSDEVSVLPEGFSVYPHVHFDRQPEPSVPDFYDTECVLKSSFPDHSWNAVNHLVGLEIHGDRKSRGNFSQYKSQNLPDILEAYNQDVLVIDVIQDDPDLFGASNEEELAHAHCENSPVKASSTNCIKDTKVYIKPESPITSEKTYSEKSNFRCMQESGMSSDTENSCNLMLKAEDVKTHNSSRGSSPSRDVSEDFLKDGQQSKLDELLTSLDVDEKFKLADGVPDIEEENKSEAGKSSDSKCEVNSELLSGLPLNDQKVNLFSGSTEMKSWTNGYKSSARSTLLPVRNCGDFEPWKMERNAIACHSVQQILDTLNLPRKYCRYYFMTSRGCERTKCWFCHVPGHGDEKICMAILRTYISIKESGLLKRAVQIFVQYYKEVTPGVDFASEVLNGLLVSLLSNCMLQEVFQILNVIVQTKTLPAVDVLLKIFEHVASLNIRNAVPTLISTFCKLIDAGIFLELEHFDYIIKLLHQLHVSNWEMSTVLNIKSRFKERYFEKTWIFDFNLAVAEIQHCKVKRDWIKLGALYLNARTGCEHFDDLQKLFLSIAEILTKASETDKPGVPFCNFADAVMKNSHHNKADRLFIGRTGISVMYSYHKVLQWVKGSKVLDKLHDLQINFTLLKGLIGPGRSASRCQIVNKATEIFLHSGNLDGAIRVLRESEWTTDAPLWPCDKMDILNRHNLLCAIVHKYLRKSLYRQAFEVLQNLPGLQKHSDIIDASQYSCLFNKLINACFENKNLGVSSSAVDFMLSRKIAIDFVLLRGLITALGRSSLWSKARTYYKNALSLGCYPELQGNLYHKLLNIPSYLSEVEMLLTIEIFLVSNASDIQSPKTSQALQIILKRSEDAVQNNSAYHRAVERLIQAAQLSDPKLFLKHMTMNVNMEEVYSLEHSSALKWLQENMEWAEKVWLFQ"
misc_feature 5032..5559 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
atgtggagtgacctgatgcttatggatgaatcacccaaggaagaaaagacacagcaggttgttctgaggcttcacactcagtacgtcagccaccctgacactattaagcagacaaagattgacggcgagcttctgaagcgctgtgcccgaaggaaggagtacggcatcacccagggggatggaacacctaatagcatgggcgagcccgtgtgctcacccacgcggctccgagcccggggcgagtcgggtttgcccacgggctctggcagttccacacgcggcgtcggggcgcggatcggcggacgagggcagagagtgaaggagggagagagtggggaagcggcgcgggaggctgcggccttctcgagtgtggagaggctttctggtgcttccttgaagtgttctgctcttcctgtacctgtgcagaaggagcaagatgagaacagacagaaattcccaggtaaaaaaatcaagggaatccagcacaggaaatctcccagcagaagcaagagtgtaggttcagcagtttcagacacagctgagtgtgaagattggcaagcagcagccacggcaatgtgctgggaagagactctaagagggacaggtcaaagtcaacagctgtttttctcaggaactactttgcagagtaagttctcagcagggagtcaaaggtatgaatatttctcagaagacctgaaattctcaggttaccacaagagttcaaggaactcaggaaaagaaggcaatcgatcctgtatggaaataaaattagaagtcccatccttgaaaagggaaattgggggtacagagaaacatggaatatcctgttttccagaaccaggaggtcttccacccaaaaaggtcgcatggagtactgaagtgaaatgcactgactccataatgatgcagaatatgcaaatctcagattttaggaagaatttgggcactcaggaaactgttcctgaaccaaagcctcagcaagaggttgatatgccagagaggttgaatgggtgtgaattagttggatcaagaacactagggacacagaaaaaagaaaagagatgcttggacaagaaaggcaggagaccagtggtgaaaccaaaagtacatggtcccaaagagggggatggttctgccttgctagaacagcatacacagtgtccagagtccaggaaaggagctttgagtatgaggaacagaaacacattgctgtcacagcagctgcaggatctgagtggacaagaacaaccaacaaccagaagaaggaagcattgcatgaaaaaagagcagcagaactcaagctctcagaaaggaccagacgactcaggggaaagtgcagaggaacaattgaaagcaattgagcaagactctggtacttcacaggctgtgaagaaggttaagacaaagcaaaacagagcagaaggttctaaggaaaaggaatctcactattctagatcttttgcagtttctacatcaggtgacactgaaagcaacgactttctgtgccatactgtaaccaaagagcctgatgtgcagtgtagaaaaagacaacgcagatctggtcaaatcaggcacttgcacagtttaagtgtgactgcagctgagaaagtgataaatacatctgcaaagtgtgatgctgaacattgcaataatgccctaaaccattgtagtggcttgctcggtgcaactgataagaatccatttgtgatattagaggactgtagttacattaatacattagtgaagccttcaggtagtggagctaccaacagttataaattaaatggattcttccgtgtagcccatggtagtaaagacctgaatgacagaatttgcaacactggtggaatgcaaaatgagagatcactcgtaaaaggtggtttatcatctaacgaagagaagaatgaaaatgaagaaggctgtgttacatgctgcctgagtgaaagcagtaaatgtttaaggggaaaaaagtggaatattggtagaaagcctagaaaaaagatgaaaatcacagagaagtctgcagacgtggctagtaaatgcaagaagtgtgagttagaaacagaagcagcagttgccatgtcaagttgctttgcagtttcaggactaaatcatattctctcagcttcatgtgatcatacatcagcttttgatgcagaaaaaaatactcatgaagtacaaactgtatcagcctggagaaagaataataccaaattacttgcatttgaaactggatttaagaagacacctgagctctctgtactagtaaaaggagaaaattcaagcagtgtggcacattatgcagctgcctctgatagtctgagagtattagctcagatccatgatgtttctgatcgtcacaaaaacaagacaggaggaaatttgaacaaagttaataggaagttgcagcagtttacctgtcaaagaacaatacctatggctggtaaaaaagtttggcccattgaatcttgtgccaggacttctgaatggtttcttaaaaatcgtaggtctatctcagaaggagaaggaatttcaaaggctgcttttgaggatttctctgataaaagcagtgttaaagcagtaggacatagtgcagtgactgggaatgtgagacagctggatttgcatacatcattggcagaaattacaaaagaaattacacataaaaagattgatccaaatattgactgtcaggcttcacttgaagcaacagaatcctcttctgtgggcatttatgagacttggacaatgggcaatgaaaatggggaatcaccagttaatacagatagaagtgccgtggcttttaaccatgataatgtgcaagaagttaaagcaactttgaattttacagcaaaacaaaaagatgaaaatgaaggagatataacagaaagaaacctgtctgtgacagtccagaatggcacatcaaaacagacgaataaaaatgaagggggtgtgacaaatagaaacctgcctgcaaaggtcaagagtgacacaacaaaacaaaaagataaaaatgaaggagatatgacaaatagaaacctggttgcgacagtccagaatggtgcaacagaacaaaaggataaacacgaaggagatgtgacaaacagaaacctgcctgcgaatgtccagaatgatacttgtacaagtaacacaaacagtataaacttcagccctaaagtatcagtagtgaaacagacattttctgatttaaacctaattaaaccattaacctctggaaaattcgaagttcctttatgcagaaaaaaatccgagtccaagaaacgggaatctgtccattcatttgaaagcaaaacttgtagtccactagagcttcctgaaagcactagtccaggaaggcagaagacaggtggagagacttttttgctgaaatctgaggagtgtcctctttctgtcatgagtgatgctacatctccagcttccatacagacaaaagcagatgagaatgacagtaaggacttccagcacagtggctctgtaaacctctctgatgaggtgtctgtgctccctgaaggtttctctgtgtatccacatgttcattttgatagacaaccagagccatctgtgcctgatttctacgacactgaatgtgtgctgaaatctagtttccctgatcattcttggaatgcagtcaaccaccttgttggattggaaatacatggtgatagaaaatccagagggaatttttcccaatacaaaagtcaaaatttgccagatatccttgaagcttacaaccaggatgttcttgtcattgatgtgattcaggatgaccctgacctttttggagccagtaatgaagaggagcttgcacatgcacactgtgaaaatagtccagtgaaggcatcctctacaaactgcattaaagacacaaaggtgtatattaagccggagtctcccattacctcagaaaagacatactcagaaaagagtaattttagatgcatgcaagaatctggaatgtcaagtgatactgaaaattcttgtaatttgatgttaaaagctgaagatgtgaaaactcacaactcctccagaggaagcagtccttcaagagatgttagtgaggacttccttaaagatgggcaacagagcaaactagatgaactcttgacgagtttggacgtggatgaaaagttcaaacttgcagatggagtgcctgatattgaagaagaaaacaagagtgaagctggaaaaagcagtgactctaaatgcgaagtgaacagtgaattgctatcaggattaccactgaatgaccaaaaagtaaatctcttcagtggaagtacagagatgaaatcctggacaaatggttacaaatcttcagcaagaagtactttactgccagtgaggaattgtggagattttgagccatggaagatggagagaaatgcaattgcttgtcattcagtccagcagatccttgatacacttaacttgccccgtaaatactgcagatactattttatgacttcacgtgggtgtgaaagaacaaaatgttggttctgtcacgttcctggacatggggatgaaaagatttgcatggcaattcttaggacatacatcagtatcaaagagtcaggcctcctaaaacgtgcagtccagatttttgtgcagtattacaaagaagttactcctggtgtggattttgcttctgaagtgctcaatggtcttcttgtttcattgctcagcaactgtatgttgcaggaagtatttcagatattgaatgtaattgtacaaaccaagacactgccagctgtagatgttcttctgaaaatttttgagcacgtggcttctttgaatatcagaaatgctgtgcctacattaattagtaccttctgtaagctcattgatgctggtatcttccttgagttagaacattttgactacattattaagttacttcaccaattgcatgtttccaattgggaaatgagtactgtgttgaacataaaatctagatttaaggaaaggtattttgaaaagacatggatttttgacttcaacttggcagtggctgaaattcagcattgcaaggtaaaaagagattggatcaagctgggagctttgtatcttaatgcaagaactggatgtgaacattttgatgatcttcagaaattgtttttatcgattgctgaaattctaaccaaagcttctgagacagacaaaccaggagtccctttttgcaatttcgctgatgcagtaatgaaaaattcacaccataataaagcagacagacttttcattggaaggactgggataagtgtaatgtattcgtatcacaaagtactgcagtgggtaaagggaagcaaggttttggataaactgcatgacctacagataaattttacactcttgaaaggacttataggtccagggaggtcagcatccagatgtcagattgttaataaagccacagaaatctttctgcattctggaaatttggatggagcaattcgggtattgagagagtcagagtggactacagatgcaccattgtggccctgtgataaaatggacatcctcaatcgacataatctgttgtgtgcaatagtgcacaaatacttgaggaagagtttgtacaggcaagcatttgaagttctgcagaacttaccaggtttgcagaaacattctgatattatagatgcttctcaatacagctgcctttttaacaagctgataaatgcctgttttgagaacaagaaccttggggtctcatcttctgcagtagacttcatgctttccaggaagattgcgattgattttgttttacttagaggattaatcacggctttgggaagaagttctttatggtccaaagccaggacctactacaaaaatgctttatcactgggttgttacccagagctgcagggaaatttatatcacaaacttctgaacattccctcttacctgtctgaagttgagatgctgttgaccattgaaatatttcttgtctcaaacgccagtgatattcaaagtccaaagactagtcaggctcttcaaataatactgaaaagatctgaagatgcagttcagaataacagtgcctatcacagggcagtggaaaggctgatccaggctgctcagttatctgatccaaagctttttcttaagcatatgacaatgaatgttaatatggaagaagtttacagcctggagcattcatctgctctaaaatggcttcaggaaaatatggaatgggctgagaaggtctggctgtttcaataattactaaatagttttcactgtattcagactgtgtcttactgatttacagcaaggtttcaaactcaagttgtggttttaaatactatattgatgataatgcagatagcag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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