LOCUS       XM_004284103             838 bp    mRNA    linear   MAM 02-MAR-2023
DEFINITION  PREDICTED: Orcinus orca BARX homeobox 1 (BARX1), mRNA.
ACCESSION   XM_004284103
VERSION     XM_004284103.2
DBLINK      BioProject: PRJNA854208
KEYWORDS    RefSeq.
SOURCE      Orcinus orca (killer whale)
  ORGANISM  Orcinus orca
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Delphinidae; Orcinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064564) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 2, 2022 this sequence version replaced XM_004284103.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_937001465.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/27/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Orcinus orca"
                     /mol_type="mRNA"
                     /db_xref="taxon:9733"
                     /chromosome="6"
     gene            1..838
                     /gene="BARX1"
                     /note="BARX homeobox 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 Proteins"
                     /db_xref="GeneID:101283461"
     CDS             1..765
                     /gene="BARX1"
                     /codon_start=1
                     /product="homeobox protein BarH-like 1"
                     /protein_id="XP_004284151.1"
                     /db_xref="GeneID:101283461"
                     /translation="

MQRPGEPGAVRFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGLPGAAGAPHLPLELQLRGKLEAPGAGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKEAEKPAEAPGEAGDRSHED"

     misc_feature    order(427..441,445..447,496..498,514..516,553..555,
                     559..564,571..576,580..588,592..597)
                     /gene="BARX1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    433..594
                     /gene="BARX1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(433..435,442..444,562..564,571..576,583..585)
                     /gene="BARX1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

atgcagcggccgggggagccgggcgcagtgcgcttcggcccgcccgagggctgcgccgaccaccggccgcaccgctaccgcagcttcatgatcgaggaaatcctcactgagcctccggggcccaagggcgccgctcctgccgccgccgccgccgccgcgggcgagctgctcaagttcggcgtgcaggctctgctggcggcgcggcccttccacagccacctggccgtgctgaaggccgagcaggcggcggtgtttaagttcccgctggcgccgcttggctgctccgggttgggctcggcgctgcttgccgcggggcctgggctgcccggcgctgccggcgcgccgcacctgccgctcgagctgcagctccgcgggaagctggaggcgcctggcgccggggagccgggcaccaaggccaagaaggggcgtcggagccgcaccgtgttcaccgagctgcagctgatgggcctagagaaacgcttcgagaagcagaagtacctctccacgcccgacagaatagatctcgccgagtccctgggtctgagccagttgcaggtgaagacgtggtaccagaatcgaaggatgaagtggaagaaaatagtgctgcagggcggcggcctggagtctcccaccaagcccaaggggaggcccaagaagaactccatccccacgagcgaacagctcacggagcaggagcgcgccaaggaggcagagaagccggcggaggcgccgggcgaggccggcgaccggagccacgaggactgagcgcggcagagggttcgggcccagggaaccccagcgcagtccgcggcccccataacccgccggaagccgcgag

//