2024-04-25 15:39:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_004282670 5122 bp mRNA linear MAM 02-MAR-2023 DEFINITION PREDICTED: Orcinus orca homeobox B4 (HOXB4), mRNA. ACCESSION XM_004282670 VERSION XM_004282670.3 DBLINK BioProject: PRJNA854208 KEYWORDS RefSeq. SOURCE Orcinus orca (killer whale) ORGANISM Orcinus orca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064577) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Aug 2, 2022 this sequence version replaced XM_004282670.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_937001465.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5122 /organism="Orcinus orca" /mol_type="mRNA" /db_xref="taxon:9733" /chromosome="19" gene 1..5122 /gene="HOXB4" /note="homeobox B4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 mRNAs, 26 Proteins" /db_xref="GeneID:101289602" CDS 3171..3926 /gene="HOXB4" /codon_start=1 /product="homeobox protein Hox-B4" /protein_id="XP_004282718.1" /db_xref="GeneID:101289602" /translation="
MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRSACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPSGALLPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPIVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGTAGAAGGPPGRPNGGPPAL"
misc_feature order(3657..3671,3675..3677,3726..3728,3744..3746, 3783..3785,3789..3794,3801..3806,3810..3818,3822..3827) /gene="HOXB4" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 3663..3824 /gene="HOXB4" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(3663..3665,3672..3674,3792..3794,3801..3806, 3813..3815) /gene="HOXB4" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" polyA_site 5122 /gene="HOXB4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ttgacgctggggggctgttgggggtcctatccacacattttgtctgtggatccagggtcaggtgccagtctccctgggtgcctaaatggggttctgagattacttattggaccctctcctggcaaagataactacaatattagtgtgtgtgtgtgtgtgtgtgtgatttttcaaatataggtgagtccagcctggctgggagagtgttggtgttagaaagttagaaatcgggcccagaagccaaccttggtaatctagatttgggatagaaaatcagagggtctctgggcttagttgctggtaggtggaaactctcctcctatccacatgcaagggtcccaggactagggatgggcagagacctttagagcatggtggttagagggttgctttttgttttgttgatgttaaagaaattgatattattctgatttgttcactagggatgcaagtattcttcagacctagagagatgaatggggagtctgggtgcagaagaggcttctgtgaacccttctcctcaccctgtgaaggccctcagctttcacagtctaggacgcagttcccttcagctccatcctcagtctcccagcttagtaaattcagtggttactggcagcctcaggaagtcccttcagaaattccagatcccccaggtttcccagatccccattttggttccactgccagcaagcctagcaggtggctgaatgagcaagtttaaactgagagagcctgcccagagctagggaggtgggggaaatggggttcctcctcacactttacctattatcccccttttctggccccaggaggtatgggaggttgggaggggccggaatatcatctggctgcatgttttatggttcctcattgcccttcattcggaaatgaaacgcctttgatctttttctcaggttgtaaacggaattgcccatcattaaatatccggggccccatctgcttggtctcccagcatttttctttacagctgtttctctctctttttaccattgaatttttctaaaaggacttttatgactcccccttcacacccagccgcctctccctcttccttttgctgagaggcgccttggaaaatatctagatattcgtttgatcgaaaactaaaggctgcaaggagcacggagttgccgattggggttttgtttctttttttttaaaaaaaaaaagtcctggggggaggggaggggcgcgagggcacccagaagggcctgattctgactacgccgcagcctcaggatgacccttcctccttttgtgcttagctaatgtttacatctcataattcatgcgccgccgagttgcgcagcggccccgaggttcgcgtccctttgcgggaccggcagcttctatttctctctaatagaagaggaagagagttgaaaaccttgtaatcccaggaatggaaccgcagtgacttttcctgctcccagacctcagaacttggaacaaaacgaaatcaaatcgaagcactcaaactacacccccaaagaaggacgcgtggaaagtaggagaactggaaaatttctgggccaagaagatctatctgtcttctgtatataccctgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatctaggggaatatgtagttgacataaacactccgctcatttttttcttcctgaagaaaaaaatattttttttttcctaaatgaggaccatccggtgactgaccacacgaagactccttccttcttctttctctttctttttctccctcaactgcttagagatggaggaatcatctacctgaaatctccccctgcctgcccttgggagccttggtcctttttcacttcacttaaaaggttaatattgttgctgatgtttttattttatcctctccctccagcccacctattccctattttgggcttagggaggcttcactgaaaatccggtaaaaatgacttgtcttcagtgtgcgaaggcaaaggaaatttgcttttcaaacggatgcagaggtcgcctttccgtttgggttcagaacaagatgccctggaaacacacgattaccaaggggtgttattgtgcggggatcacccctgtctcctatcctcagcatcacaaggatgtgagatttctgctcgctgcgcgggcggccgcattagcggcaattacaacgtctcgacgcccggttagcgttgctccggtgcttttggaattagcaaatttctattcagcgtgctctcaaaagttggaggttttttactctagtgctcatgtttagtgtgggaaaccaagtcgtttctcccggcttgggccgcgtggggtacggggaggagtggataggagggggaaacagacggactgactgacacagccaaactaatagcgcagctaaatgcgatttggaaggcgaggtctccccgaattagtgcatgaatttcctatcgatccgcccgcggttccattcatctctgacaagtccctccgtgcacccgcctggttgctccgatgcctcccctctcactccctacccctccccgtgcggctgcagagaaaaggcccacgctcagtgcctctcccccgtgtgggttcccctctcaggcggagcccctagtccgtccctcacttaactcccccgcacagacgccgggtaaaggggctccccctcgccacgtcgtgaggaggggctggggccctaaggaaggcctggggggaggtgaggcaggacaggaggggccacatccgaagccccagcttctgaggggatccagggattgcgctccgcccagcgccccaacaggcccttgggtggcaacctgctcactcgctctccatctccctccctccctctccccaatccgggtgaggagaagcgaggaggcggtcgccccgcaggagccctatgtaaatcctggtgttgggtggggagggggggggaagagaagaaggggaaataaacctctttggctggagtagggtccgggtgagcagatttccttatccgggaatcgcaggcggggcggccattggctccgaggatcacgtgggcccctaactttgttcacttgacagtaagtaggagggctttcggaaacaggaaaacgagtcaggggtcggaataaattttagtatattttgtggacaattcccagaaattaatggctatgagttcttttttgatcaactcaaactatgtcgaccccaagttccctccgtgcgaggaatattcacagagcgattacctacccagcgaccactcgccggggtactacgccggcggccagaggcgagagagcagcttccagccggaggcgggcttcgggcggcgctccgcgtgcaccgtgcagcgctacgcggcctgccgggaccctgggcccccgccgcctccgccgccgcccccgccgcccccgccaccgcccgggctgtcccctcgggctcccgctccgccgccctctggggccctcctcccggagcccggccagcgctgcgaggcggtcagcagcagccccccgccgcctccctgcgctcagaaccccctgcaccccagcccgtcccactccgcgtgcaaagagcccatcgtctacccctggatgcgcaaagttcacgtgagcacggtaaatcccaattacgccggcggggagcccaagcgctctcggaccgcctacactcgccagcaggtcttggagctggagaaagaatttcactacaaccgctacctgacgcggcgccggagggtggagatcgcccacgctctctgcctctctgaacgccagattaagatttggttccagaaccggcgaatgaagtggaaaaaagaccacaagttgcccaacaccaagatccgctcgggtggcaccgcaggcgcagccggagggccccctggccggcccaacggaggcccccccgcgctctagtgtcccccacgtgggagccgcgaacctcggggcgggggtgggttgcgagtgcgggggggggcggttgggggagacgcgggaggggaccctgaggcctgggtccgaaaaagcctacctgctctccccccactttgtctatttacacgaataaatgcagaggaggggggaggggaagctttatttatagaaatgacaatatggagccaggcgaggccccccagaagcaaggttcaagtctcttgctttcttccttaaaaaaaagaagaaggaagaaagaaaaagacagaaagagaaataggaggaggctgcactcctcattttcagctttggtgaagatggatccacgtttcatctttaatcacgccaggcccaggcccatctgtcttgtttactctgccgaggagaggacgggcctcggtggcgaccattacctcgacaccccgctaacaaatgaggcccggctcggccgccgccgccgccgcctctgctgctgccgctgctggaagacagtctggatattttttctttgtccccattcctgaaacccagcgaaagcatcctctgactgccagatagcgcagtgttttggccacggtaacaaacacacgcacacaacctctctccccctccgtgcccgttcacggggacgctggcggctcacccccttccactgcggggctggggtagggaccacaggaaggggacaagtggaggcgggcggggggatgcgtgcctcggctacgcagaagcagggcagggaaattgagtccaagagaaggagaggacccagagaccaggagggccttcctctggaaggtcaagccgtgcctgcaggggtgaggggccagttgcgttctgggagccgggcacaaccctctggccaatctggagttgtacagtggaggcctgttctagactgaaagtgaatgtgaaactaggaaataaaatgcccttcccacctgggagatgaggtgacagagacctctcccatagtttatcattgttgcattgattattattattattaattattttatgtcatgtgcgtcctctctcctatgctctttctgacattccaaaccaggacccttcttagttctggggctgcctgagtctagaaccctttgttggcgtgaaaatgtgtgtcctgtacagagtgacaatagaaataaatgtttggtttcttgtgaccagca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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