LOCUS       XM_004282665            2396 bp    mRNA    linear   MAM 02-MAR-2023
DEFINITION  PREDICTED: Orcinus orca homeobox B7 (HOXB7), mRNA.
ACCESSION   XM_004282665
VERSION     XM_004282665.3
DBLINK      BioProject: PRJNA854208
KEYWORDS    RefSeq.
SOURCE      Orcinus orca (killer whale)
  ORGANISM  Orcinus orca
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Delphinidae; Orcinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064577) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 2, 2022 this sequence version replaced XM_004282665.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_937001465.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/27/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Orcinus orca"
                     /mol_type="mRNA"
                     /db_xref="taxon:9733"
                     /chromosome="19"
     gene            1..2396
                     /gene="HOXB7"
                     /note="homeobox B7; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 mRNAs, 29 Proteins"
                     /db_xref="GeneID:101288445"
     CDS             1150..1803
                     /gene="HOXB7"
                     /codon_start=1
                     /product="homeobox protein Hox-B7"
                     /protein_id="XP_004282713.1"
                     /db_xref="GeneID:101288445"
                     /translation="

MSSLYYANALFSKYPAASSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTAGPGATRQDKAEAEEDEEE"

     misc_feature    order(1561..1575,1579..1581,1630..1632,1648..1650,
                     1687..1689,1693..1698,1705..1710,1714..1722,1726..1731)
                     /gene="HOXB7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1567..1569,1576..1578,1696..1698,1705..1710,
                     1717..1719)
                     /gene="HOXB7"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1570..1728
                     /gene="HOXB7"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     polyA_site      2396
                     /gene="HOXB7"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ccaggccatgctggagagatgcgcctgggctggtggctttatccccccaaccccccaacctccccctttgtttttgtgtgccctctcctgtgtgtgtgtgtgtgcgggggtagaggtggagtgcggagctgatgaacaagctgaaaaataaaaaaaaaatttaatttttttcgtactctcgtgggggggggagcaggagaagggagatgctcttccctgcctctccctttctgggacttggccaccttcgcccagctccgaggtggtggctcgccgccttccttccttcgctccctctgcttctccagcagccacgctcgactaaggcatccgcctctgggaaccaggagagcagcataccaggccaccctcctcccttcctttctcttcccacccaccccacccccttccttttttaattttcaaacctttttttttattttttagccaccagaaaccgcagcatccaacgcccgtgggctggattccgcgcctctgggagcacccaggaaacctcactccgtccctgcccgtctggggcagagagagagagagagcgagccttgaggccaggctcacctcgctcctcacctcgggagaaacggaccaattccggactaagttcccccaaaggcccagccaggctgaagcggtccggattaataaagacctggcctgcccccacccacccactcacccggttgtatgcaatccctgcgtttgtttctggctgggtaacgggctggggaggagggggtgacaacaaggatcgctctcggaggttatttattttcccttccactcaatcccttcttctccaaatctcgcctgcaagcttcctccagcccacgggggtcgacagcggcccttgagcccccagccctaatccacagggcctggttttctcattcattattgatcatattttataaatccaacgccacacaattttttccacattaccgggagccgtggggaggctgcccggctattggcagaggggacgtcacgtgggcggggtcacgtggtccagagaggaaaaagggggtcctttttggtgtaaatctggactctaattctgtaatatatcaaggaatctcgtaaaaccgacactaaaacgtccctgactacaaatcatccggccaaattatgagttcattgtattatgcgaatgctttattttctaaatatccagccgcaagttcggttttcgctaccggagccttccccgaacaaacttcttgtgcgtttgcttccaacccccagcgcccgggctatggagcgggttcgggcgcttccttcgccgcctcgatgcagggcttgtaccccggcggggggggcatggcgggccagagtgcagccggcgtctacgcggccggctacgggctcgagccgagttccttcaacatgcactgcgcaccctttgagcagaacctctccggggtgtgtcccggcgactctgccaaggcggcgggcgccaaggagcagagggactcggacttggcggccgagagtaacttccggatctacccttggatgcgaagctcagggaccgaccgcaagcgaggtcgccagacctatacccgctatcagaccctggagctggagaaggagtttcactacaatcgctacctgacgcggcggcggcgcatcgagatcgcgcacgcgctctgcctcaccgaaagacagatcaagatctggttccagaaccgccgcatgaagtggaaaaaagagaacaagacagcgggccccggggccaccaggcaggacaaggccgaggcggaggaggacgaggaagagtgagggacagagaaagggcagaggaagagagacgaaaaagggaaagagagagagagaaacccagctctgggaactgaaccaggaaactcaagtcaaatagggaggaaaaaaaaaaactatttaaatggaaagcagttaattttttttaaggagagaaggtgaaattttggtttcttaacactggaaaaaaaatactacctataggaaagtccatcaggtttgttttgtacagtatgggaaggacatcatctacctgttctgtagctttctggaatttgcctccccttttctatgttgctaattgttaaggtctttggtaaaatcttgctgttttgtaagccccatctttgacactgtctgtgtggtctgtgggtctggaataacatgtgtggttccccggcttcctgagcaacccccccttcccagtagcggcactgaaggggccttagggagccctaaggacccaccaactagctcaagtgtcccctctgtgcacctggcctgcccgctgctccttgctcccaccagcccctgtgatcctctttgcattctatgtgtatctgaaggatggagaaataaaagcaattaaaaataaa

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