LOCUS       XM_004282631            2598 bp    mRNA    linear   MAM 02-MAR-2023
DEFINITION  PREDICTED: Orcinus orca distal-less homeobox 3 (DLX3), transcript
            variant X1, mRNA.
ACCESSION   XM_004282631
VERSION     XM_004282631.3
DBLINK      BioProject: PRJNA854208
KEYWORDS    RefSeq.
SOURCE      Orcinus orca (killer whale)
  ORGANISM  Orcinus orca
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Delphinidae; Orcinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064577) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 2, 2022 this sequence version replaced XM_004282631.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_937001465.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/27/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Orcinus orca"
                     /mol_type="mRNA"
                     /db_xref="taxon:9733"
                     /chromosome="19"
     gene            1..2598
                     /gene="DLX3"
                     /note="distal-less homeobox 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     mRNAs, 5 Proteins"
                     /db_xref="GeneID:101280791"
     CDS             240..1103
                     /gene="DLX3"
                     /codon_start=1
                     /product="homeobox protein DLX-3"
                     /protein_id="XP_004282679.1"
                     /db_xref="GeneID:101280791"
                     /translation="

MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGTSYRQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEAPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHLQQPPPQPAALHHASPGPPPNPGAVY"

     misc_feature    318..560
                     /gene="DLX3"
                     /note="Homeobox protein distal-less-like N terminal;
                     Region: DLL_N; pfam12413"
                     /db_xref="CDD:432536"
     misc_feature    <564..935
                     /gene="DLX3"
                     /note="Homeodomain-containing transcription factor
                     [Transcription]; Region: COG5576"
                     /db_xref="CDD:227863"
     misc_feature    order(627..641,645..647,696..698,714..716,753..755,
                     759..764,771..776,780..788,792..797)
                     /gene="DLX3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    633..794
                     /gene="DLX3"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(633..635,642..644,762..764,771..776,783..785)
                     /gene="DLX3"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     polyA_site      2598
                     /gene="DLX3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ggcggagctggtagcatttgactgtggcttgggacgctacgagaagcgcgccgcgaccgccggaagcccggcgatggtctaagcgcccctcggccgaccctccccagagacgctgccgggccctccccttgccctccggacacgcacccccgcctcgtctcctccgcctcccccgcgctcctgccggttccggcgctccggccgaggccagcccggggggtggcgcggcgcccgccaggatgagtggctccttcgatcgcaagctcagcagcatcctcaccgatatctccagctcgctcagctgccatgcgggttccaaggactcgcccaccctgccggagtcttccgtcactgacctgggctactacagcgctccccagcacgactactactcgggccagccctatggccagaccgtgaacccctacacctaccaccaccagttcaacctcaacgggcttgcaggcacgggcgcgtattcgcccaagtccgagtatacctacggaacctcctaccggcaatacggagcctaccgggaacagccactgcccgcgcaggacccagtgtccgtgaaggaggaaccggaagccgaggtgcgcatggtgaacgggaagcccaagaaggtccgaaagccgcgcacgatctactccagctaccagctggccgccctgcagcgccgcttccaaaaggcccagtacctggcgctgcccgagcgcgccgagctggccgcgcagctgggcctcacgcagacgcaggtgaaaatctggttccagaaccgccgctccaaattcaagaagctgtacaagaacggggaggcgcccctggagcacagccccaataacagtgattccatggcctgcaactcaccaccgtcacccgccctctgggacacctcttcccactcgactccagcccccgcccgcagccagctgcccccgccgctcccgtacagtgcttcccccagctacctggacgaccccaccaactcctggtaccatgcacagaacctgagtggaccccacttacagcagccgccacctcaaccagccgccctgcaccatgcctcccccgggcccccgcccaaccctggggctgtgtactgagcacccacctggcctgaacctctcacgaaggaaccccaggaccaagcagaaggcgcctccgtcctagccgacactcaggaatcatggaggagcacaggggaaaggacaccccttctcccccttcccttgccccttcctccagggacccaagagcttccagatgaaatttgcatggaccaaggatgccccctgaatttcccttcccctgcctagacactggggtgcccctccagatgtttgggaacttcactgcagctgggacagctgtttcccttctgctccaagagcctggattggctttaaatggctcatcaccttccagattctaaaacttagtaccgagtccctagactggattccttgggcactggggacaccgcggagcgtcttcaggtcaggcctgggctggggcaccaggcactgtggattctgggacctgccaggcctgagttcctgccatggggacctgggctgccccttaactgagcattccctctgccaaaaagacattgaaccttgagactgggactcagggtggggacctcaacgagccccgccctgaacttttagccctcatttagggtttgagggttaaaccaaagaaaagcccccaagtaagggaagcttttaatatttgtggctttagagagaactcaaggagcacctcccctcccccgctttggtcggaggggaggggtgggtcccaggcatccttcccgaggacccaattcttcttccatgtacaggactttgcacaactttggtttcaaaagctgttgaaaaacaggaagacaaagggcattgttaacagataggaccaatctcccctgcgtgggtgcctctgctcgcccgcaccccacctattcctctcctccagtaagttggcagttttggcgccaaaccccaaatctccaaggcaagacaaaccccaaaacaccccctttccggtggtcttggaaacggataattcccaccaagacggagaatgtcgggtgaggtgcacggggcacatgggaagggttataactcggtgcctttaggggtgagggggtggctgtctgaagggtcagtggcactgccccttcctggcccagacgccccccagagctaactttcctccacccctgatgtggtcgaacatcgaagaaaaggagaagtagaagactgtagctatatatatatatatatagtatgtatttttttttaaagcaacagagagaagcagcctcctccctactgtggtttcctatttatgtggccctttcctcctggatgtacctgcctgtgcgtcgcgagctgagagaaacagatgtgggctccggctggatttgggtttgtgggaggcgcaggcgagaggagagacggatctcgaagagtcccaccccaggggtagaggaacgaagccaagtcccaccccctcccagccttctcatttctgctttcttattggacccatctttatatataacattaataaaaaagaagaaaataacca

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