LOCUS       XM_004274235            7497 bp    mRNA    linear   MAM 02-MAR-2023
DEFINITION  PREDICTED: Orcinus orca homeobox C12 (HOXC12), mRNA.
ACCESSION   XM_004274235
VERSION     XM_004274235.3
DBLINK      BioProject: PRJNA854208
KEYWORDS    RefSeq.
SOURCE      Orcinus orca (killer whale)
  ORGANISM  Orcinus orca
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Delphinidae; Orcinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064569) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 2, 2022 this sequence version replaced XM_004274235.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_937001465.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/27/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7497
                     /organism="Orcinus orca"
                     /mol_type="mRNA"
                     /db_xref="taxon:9733"
                     /chromosome="11"
     gene            1..7497
                     /gene="HOXC12"
                     /note="homeobox C12; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 6 Proteins"
                     /db_xref="GeneID:101280406"
     CDS             2091..2930
                     /gene="HOXC12"
                     /codon_start=1
                     /product="homeobox protein Hox-C12"
                     /protein_id="XP_004274283.1"
                     /db_xref="GeneID:101280406"
                     /translation="

MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLPWPSAEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDSKGYYREPCAEGGGGGLKREERGRDPGPGVGPGAALLQLEPSGPPALGFKYDYAAGGEGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLAASGAPWYPIHSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF"

     misc_feature    2724..2894
                     /gene="HOXC12"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(2724..2738,2742..2744,2793..2795,2811..2813,
                     2850..2852,2856..2861,2868..2873,2877..2885,2889..2894)
                     /gene="HOXC12"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(2730..2732,2739..2741,2859..2861,2868..2873,
                     2880..2882)
                     /gene="HOXC12"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

atctttatgaccaaaaataacccccaaataaatttttaaaattaaatattcagtaacgctcattaatgcatcttgaaaagaggcataaataagatgttggagatgctgtgacatggattttgcagccgagggatgctctgtgcagccgcgcagccccttaatcaattaagcacgaaaaggccaattcaggctctctcctgcccgctcctcggcgccccggctctcgtggttctgactgaaggtgactgcgccggggctgggatcccaccgcttggcttcagttctggcaagtgggcccggcgcggggcgggctcctggcggggggggggcgggagggaccttggacggccagggcagggaaggggaagaggggcgaggggcgggtgccgagctgcgagctgtgccgggctgggcgaagcccgcgcggacacatttctgtcccagctatggtttgggatatgaaatcgcccagggagctgtggaattcgaagaatctgcgtttctctctgccatgtcctgcagaagagagaaaaagagggagatgagaatcttctgcttcgctctgcttttgtagcttccgctcgttctcagatatttaactttcacccacatggatttctttctcccagattctctcagactcacgtctccctcattttctccaaatcttctggtgttctgtcatatttagacttttgctgaactattgatctcacctggtattacttaaagccatgcttttgctggagcccgaagtaatcgcatagaaatctgagtattgtgtctactggactccaatagaatacacctagttttgagggtttgtttcctttttcattttaatctgtttggctgtgtctgtggacttggttgagaccggattgtggtttccagatgtcgattaatttcgcctatggccagcgttgggtcctcagccttctgtggaaggagctactgaggttagcactataaaaataattttaaacccctaacaagataattctctggcattctttcccttagtcccagcacacctattgggctgggcacagttatctgatggtcccagtggtatgctaggctggttctggggtgtgagtgtctcctccacagtgggaatcaggagcctcttgggccagccaagccctgctgggagcccagagcctcttgctgcaaagtctccaagagacgcccccagaagcccccctgacccacagaagtcatggggaagagtagttcagcccccagattttcaggagcaggcaggcaagtcctcatggagctgggcgcttcctttttctgctgcttctgcctctcttctgcatctctcctctgacggtgagtgaaggtgtgtggctgggtggctcccagctggagaatggggaagacccagcattagtaatcctccctgagcccttcctggaggagacaccccaggtgtctccctaaattcttggggagaaagagctgaggaaaaggagcacagcagcggcagggctgggagagacagcgacagggaaacctgtctttacccccacttctcctctactgtaaataaaccccgagccaaagggctcatccgtctccttaaacagccagtaaactttatatgacacaatatctaatagtaatttattggggagatattgtaaattccaacggttttagttaataaaggagctaattaaagagggacgggctgggctcggccagctgttggtgagaagataatacatctgggggggtagtgcagggtgcagaagcgtgtatgtgcgggtatttttggtgtggctttttccctcttgccccgtgtcgggcgattgcctcgatctctgcgttaggttttatatgattttttaaaaaccagaagccagagaataaatctgcccccgcggttcgttccctcccccccccattggggaagggggaagttggagttggtgcggggtggggggattctctgtccccacccatccccctggcggcggcgcccacgtgagctggacggccaatgggtggccggtgcaggtttaactatgtttaatgtcagatagcaataaagtagaagctgccggtcgggccccgcggaaatgggcgagcataatctcctgaatcccgggtttgtggggccgctggtgaacatccacacgggagacaccttctacttccccaacttccgtgcgtccggggcgcagctgcccgggctgccttcgctgtcctacccgcgccgcgacaacgtgtgctcgctgccctggccgtcagcggagccgtgcaatggctatccgcagccctatctcggcagcccggtgtcgctcaacccgcccttcggccgcacgtgcgagctggcgcgcgtggaggacagcaagggttattaccgcgagccgtgcgccgagggcggcggcgggggcctgaagcgtgaggagcgcgggcgcgaccccggcccaggagtcgggcccggggcagcgctgctgcagctggagccgtcggggccgcctgctctcggtttcaagtacgactacgcggcaggcggcgagggtggcgcgggacccccgcacgacccgccctcgtgccagtcgctggaatccgactccagttcgtccctgcttaacgagggcaacaagggcgccggcgcgggcgaccccggcagcttggtatcgcctttaaaccccggcggcggcctcgcggccagcggcgcgccctggtacccgatccacagccgctcacggaagaagcgcaaaccctattcgaagttgcagctggcggagctggagggcgagtttctggtgaacgagttcatcacaaggcagcgccggagggaactctcagaccgcttgaatcttagtgaccagcaggtcaagatctggtttcagaaccgcagaatgaaaaagaaaagacttctgttgagggagcaagctctctccttcttttagggggcaagacacgggcgccagccccagactgagcctgtctctggcagagagcaaagagggggcactgcctgggacacagtccccgcttagaacgccaggcgtctctggcaggtcctcctgggatgtcctcttgtctgttttgttcgtggttccctcccacacaccccccagcagaccctgccaggtcccagagagaagggaagaacccagccagggagaggaagcccacagctgcaggcagggggtaggggcagggaaggctgaggcgctggggaggggctagtttgacatgggaccggggcgttgggcctccgtctgaagatctggaggaaaggtgactcaggcgtcccctcccaccactttccttccgtggtcttaggtctgtctgcctgcaggagtaggcgagggtggggacagtgggactaaggctctcagaacttgcagttattggggttaggagaggctgcgaggagggagcaagagtggaggatgggcagagagcagggaaggggtcagggtagctctgggagggcagaaggaagtggggggacctaggaggaagtgtggtttgggagaacagaatgatcggcaatgtccaggtccgctggggtctgggtcctccaggcctggacacagagcaggcccaggcataagcatttggcagacccggctgtggacaaggtgatgatcaggcttttgtcccctctagggcaggccacccgaaccgtctcctggtccccagccctctcccgagccccctgcgcccattcgctcacaggtgtgctgccatccactcttcctgccgctgaggcggctgcggaccggaagccgcaagcggggaattgagagctgagcggacgcagcctcgggttcagtagccaccccagggacccccacctggccctccgggaagcccaggaagctgtaaaaggagctgcgaagcgcggcattgattggccgagagagtttctggcagccgctgcagattctcgcttcgccgctggcgttcacggtcacggccggccggaggctggaccggcgtaatttacgaggcgggaagagaatccgcccctaaaaggggctaccggccgcggaggcccccgctcagcccgggtttcccaggctggtgacaatgaaggagggggcactgcagccccccacccaactcctttctctcttttacccacccctactccacctgctccccaacggcgccctttgtctcaggatccgctgtctccgcccccaggccagggagccgcagattaggaggaccagagcagagggaagggcacatccccaaaacccactggaggccagaaagtggcttctccagccgagggccttttattcatagcccccttcaggccccagccccagcccagtagatcccaggctggcttccgaaagagaagctgtgaaggagcccccctgccttcttgcactctgttttgattccccttggtgagagtcccccaacctcccacctgctgacccacccttgctaggatcaagagggcgagaagcaggggaatgatgggagttaagcccagcctggacagtgtgaaactggcccgccagcttggagttcttcccacctggggaaagtctctccttccacaccctggaaaggcaatccactctcccaccagattcaagtccctgtgaaagactgtgcagaggcatgggcaaacatataggcacagctgcccagtacagcacttggcccacaccactctcctgactgtacttgcaaagaggcagcctcatatccccaaatacagccctgcagagtagccgtacaatcacataccctcatcccgcactgggcacctgacacacttccccacccacattaacctatgtacacgtttgcagaaatcaccaccgttccagctgtctgcacactcccctgtgggctggcgctgggtatgaggcactcccctctttgcctggtcacccatgtaccccttcatacagcccctcctgtgacctcttggtctctggggtgctggatttgagtttcaccactccagcctgactctcccagcttaataaaggagaccaaaacactccaaacggggtggggggacaaagatatgcaatattctcttcctgtcgctttaaacttgatttctgtgagcttctctgtcaatctgtgtcctgttctctgtgtctgttgctagtacctagtgtgatccctgtgggtagatgccctcctttcctccctccccggttctctgtagtgtgccctcctatgcaaacgtctgtctctagcacgttttccctttatatagtccttgtacagagttgcttcatcatattaatattaataataataattaaaacatgatggtatgatgatgtgatttttttgagagaaaaattttaaactggctccatacacaccgtctcctatgcccagaaagaatgggatccccaacctcctagctgttcccccactttactttttccagcccaggtgaataataaaaatagtaaacgtataataataaaggaagagcggttgcaggggcaacaaaaatatacaagcaaccaagatctgttgatgagctgccatctccagtcccaagcaattactagcagagagaaaattgggggatggtagattagcagggaggagagggatatctgaggagtcgtggggttgtaaaaataatgtggacagcccggaggaggctgaaactaccttcagcaccacaaaaaggaagtctgagctgcaagatctccaagaagtgaagccagggtaggggcaagagctggttggagctgggatggtgagagtgccatggggtaggggcaggggttggtgggtccacacttcaccctgatggttctaaccctgtggcttcactctgaaagcacattttgtgcactgcaagatgactggagagtgtactaaagaccccttgaagctggtgaaataggctccgcctctgtcagctgcggcccctccaggccgtgacagagagaggcccaggtccaggccagagtctagtctcagctgagcccaggagtcctctgcacctccacctcactccttccttatggatgggatgccctccctctgcctccacccgtgagcctctgatccctgagtttccctttctcacagccaggctccaatcacgaagtctcctccaaattccccctccaccctcctgggcctgctccagaataacaagagcccccctctgagcccagcctcccgagccacgcctcctgccctgaaatctttctttctctttctcccctcctttctttactcctgcaactaggaaaagtagcagatttagaccaaatcccatcctccctttgccccaatcccctgctgagtgtgcatctgaaggattcgggcaggaaggagatcccaagctttaggagtactcctataaagggcccacagagttcggggtaggctggggactggatagcttctggcagccttgagctggtggtgtaggggagggactgagtggctacccttgagtctgaataaaggttgggggaggtctgaatcccagtgaatccaggcaagagactaccctcttcttaagccacatctatacaggaagagttaacagtgaaggcatttctggctaaataggaaagagggaatttagagaggtcaggaataactggcctttaatttattcccttggtttattcccagagacactgcagatctgagagagaaggttccttgttgggttttgtctatgcaggccctgagactcaataactggggaagctgtcagagaaggaaaaacactataacctcctcccaacggctgaataacaagtccttgggtctcctggccaaagagaaggtcatggctgcagccacaacccaaatacccaggacctggctgagctctggatctgggcaaagattgcatctattttgcaagtatttgtctggcttaagtcctcaaactacaatttactccactgatttaagacaaggcaccctgtgtctctaattgggtcttgaggaacaagaaaaggagagagttatctggataatccaggtagaaaaataatttcactgttgtgtatgtgtaagcttatgccattcaaatgagttgtgtatttggccctgattatcacccagttctactccagtctgagctgcgtacacgcagctagggtatttaaagccactatcgagcgggcgggagatgggcccggcagcccgggctctgtggatgctaatgcagccggaaacccggcgcgatcgatggctcagacccagagcggtgcagggaccgccggccccgatcttcgaaaaatcaaacccccgggaccttgggttccggaccggccggagctcccgcccatcctccccgccattaccaggaaagtaggagcggtttttaggcccccgacccgtgggggaaacgcaccccggagcccccaaccctctctgcgcggcaggcacagggaggcgccgaaggtctcggtgtaatttagcgcgaggtgggctgcaggcctgggatcccgcagccgcgtataagccgagcgttaggctcgagcggccgccctt

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