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2024-03-29 01:33:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_004270423            1080 bp    mRNA    linear   MAM 02-MAR-2023
DEFINITION  PREDICTED: Orcinus orca NK2 homeobox 4 (NKX2-4), mRNA.
ACCESSION   XM_004270423
VERSION     XM_004270423.3
DBLINK      BioProject: PRJNA854208
KEYWORDS    RefSeq.
SOURCE      Orcinus orca (killer whale)
  ORGANISM  Orcinus orca
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Delphinidae; Orcinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064574) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 15, 2020 this sequence version replaced XM_004270423.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_937001465.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/27/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Orcinus orca"
                     /mol_type="mRNA"
                     /db_xref="taxon:9733"
                     /chromosome="16"
     gene            1..1080
                     /gene="NKX2-4"
                     /note="NK2 homeobox 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 11 Proteins"
                     /db_xref="GeneID:101283328"
     CDS             13..1080
                     /gene="NKX2-4"
                     /codon_start=1
                     /product="homeobox protein Nkx-2.4"
                     /protein_id="XP_004270471.1"
                     /db_xref="GeneID:101283328"
                     /translation="
MSLSPKHTTPFSVSDILSPIEETYKKFGGAMDGTPPGLGAPLGAAAAAYRAPPTGPSSQAAAVAGMQPPHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVPQFPHGAMGGYCNGGLGNMGELPAYTDGMRSGAAAAATGWYGANPDPRFSSISRFMGQSAGVNVAGMGSLPGIADAAKSLAPLHTAAAAAPPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEVGLGPPPPSPRRVAVPVLVKDGKPCQNGAATPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDAAAGDYGGGALGANLLYGRTW"
     misc_feature    610..759
                     /gene="NKX2-4"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      
gtccgccgagccatgtcgttgagccccaagcacacgacgcccttctccgtgtccgacatcctgagccccatcgaggagacctacaagaagttcggcggcgccatggacggtacgccgcccggcctgggggcgcctctgggggccgcggccgccgcctaccgcgcgccgccgaccgggccctcctcgcaagcggcggccgtggcgggcatgcagcccccgcacgccatggcgggccacaacgcggcggcggcggcagcagcagcggcggcggcggcggcggctgccgccacctaccacatgccgcccggcgtcccgcagttcccgcacggcgccatgggtggctactgcaacggcggcctgggcaacatgggcgagctgcccgcctacacggacggcatgcggagcggcgcggccgccgcggccaccggctggtacggcgccaacccggacccgcgcttctcgtcaatctccaggttcatggggcagtcagcgggagtgaacgtggccggcatggggtcgctaccgggcatcgcggacgccgccaagtcgctggcgcccctgcatacggcggcggcggcggcgccgccgcggaggaagcgccgcgtgctgttctcgcaggcgcaggtctacgagctggagcggcgcttcaagcagcagaagtacttatcggcgcccgagcgcgagcacctggccagcatgatccacttgacgcctacgcaggtcaagatctggttccagaaccaccggtacaaaatgaagcggcaggccaaggacaaggcggcgcagcagctgcagcaggaggtcggcctgggcccgccgccgccgtccccgcgccgcgtggccgtgcccgtgctggtcaaggacggcaagccctgccagaacggcgcggccacgccgacgcccggccaggccggcccgcagccgcccgcgccgacgcccgcgcccgagctggaggagctgtcgcccagcccgcccgcgctgcacggcccggggggaggcctggcggccctggacgcggcggctggggactacggcggcggcgcgctgggcgccaacctgctctatggcaggacgtggtga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]