2024-04-26 14:38:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_004266471 6834 bp mRNA linear MAM 02-MAR-2023 DEFINITION PREDICTED: Orcinus orca protein argonaute-4 (LOC101280127), transcript variant X1, mRNA. ACCESSION XM_004266471 VERSION XM_004266471.4 DBLINK BioProject: PRJNA854208 KEYWORDS RefSeq. SOURCE Orcinus orca (killer whale) ORGANISM Orcinus orca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064559) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Aug 2, 2022 this sequence version replaced XM_004266471.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_937001465.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6834 /organism="Orcinus orca" /mol_type="mRNA" /db_xref="taxon:9733" /chromosome="1" gene 1..6834 /gene="LOC101280127" /note="protein argonaute-4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 42 Proteins" /db_xref="GeneID:101280127" CDS 323..2908 /gene="LOC101280127" /codon_start=1 /product="protein argonaute-4 isoform X1" /protein_id="XP_004266519.1" /db_xref="GeneID:101280127" /translation="
MEALGPGPPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNRDVVDTMVRHFKMQVFGDRQPGYDGKRNMYTAHPLPIGRERVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 398..787 /gene="LOC101280127" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 818..970 /gene="LOC101280127" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 971..1333 /gene="LOC101280127" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1127..1129,1172..1174,1214..1216,1226..1228, 1280..1282,1301..1303,1307..1309) /gene="LOC101280127" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1472..2779 /gene="LOC101280127" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1883..1885,1895..1897,1931..1942,1949..1951, 1973..1975,1982..1984,1994..1996,2006..2008) /gene="LOC101280127" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2087..2089,2093..2095,2333..2335,2747..2749) /gene="LOC101280127" /note="active site" /db_xref="CDD:240015" polyA_site 6834 /gene="LOC101280127" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cgcgcgcgccccgcgccctctccccgcccgacgggcgcgcgcgctggctccggctcccgctcccgctcccgctcccgctggcggcggcggcggggattgtttttgttgtcgctgaggccggaagagccgcgggagccgggtccctgtccccgggccgggcgccgccgccgccccttgcttagcgcccgcgtctccgcggcgcccccatagcgccaatattccggagatcaagcgttacgcggcggcggcggcggcggcggcggcggcggggcccggagcgggaggcgccggggaccgcggcgaggcggcccccgccgccgccatggaggctctgggacccggacctccaaccagcctgtttcagccgcctcgtcgtcctggccttggaactgttggaaaaccaattcgactgttagccaatcattttcaggttcagattcctaaaatagatgtgtatcactatgacgtggatattaaaccagaaaaacggcctcgtagagtcaacagggacgtagtagatacaatggtgcggcacttcaagatgcaggtatttggtgatcggcagcctggctatgatggcaaaagaaacatgtacacagcacatccactgccaattggacgggagagggttgatatggaagtgacccttccaggtgagggtaaagaccagacctttaaagtgtctgttcagtgggtatcagttgtgagccttcagttgcttttagaagctttggccgggcacttgaatgaagtcccagatgactcagttcaagcacttgatgttatcacaagacaccttccctccatgaggtacactccagtgggtcgctcctttttctcacctcctgaaggttactatcaccctctgggagggggcagggaggtttggtttggctttcatcagtctgtgagacctgccatgtggaatatgatgctgaatattgatgtatctgcaactgctttctaccgggctcagcctatcattgagttcatgtgtgaggttttagacattcagaacatcaatgaacagaccaaacccctaacagactcccagcgtgtcaagtttaccaaagaaataagaggtcttaaagttgaggtgacccactgtggacagatgaaacgaaaatatcgagtgtgtaatgtgactaggcggccagccagtcatcagacttttcccttacagctagaaaatgggcaagcaatggaatgtacagtagctcaatattttaagcaaaagtatagtctgcaactgaaatacccccatcttccctgtctccaggtgggacaagaacaaaagcatacatacttgccacttgaggtttgtaatatagtggcaggacaacgatgtataaagaagctcacagacaatcagacttccacgatgatcaaagccacagcaagatctgctcctgacagacaagaagaaatcagtagactggtgaagagtaacagcatggtgggcggacctgatccatatcttaaagaatttggtattgttgtccacaatgaaatgactgagctcacaggcagggtacttccagcaccaatgctgcaatacggaggccggaataaaacggtagccacacccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagttgcttgttttgcgcctcagaaacaatgtagggaagatttactaaagagtttcactgaccagctccgtaaaatctctaaggatgcaggaatgcccatccagggtcagccatgtttttgcaagtatgcacaaggtgcagacagcgtggagcccatgtttaaacacctgaaaatgacatatgtgggcctacagctaatagtggttatcttgcctgggaagacgccagtatatgcggaggtgaaacgtgttggagataccctcctgggtatggctacacagtgtgtccaggtaaaaaatgtagtgaagacctcacctcaaaccctttccaacctttgcctgaagataaatgcaaagctcggaggaattaacaacgtgcttgtacctcatcaaaggccctcggtgttccagcagcctgtcatcttcctgggagcggatgtcacgcaccccccagcaggggatgggaagaagccttccattgctgctgtcgttggcagtatggacggccaccccagccggtactgtgccactgtgcgggtgcagacgtcccgccaggagatctcccaggagctcctctatagtcaggaggtaatccaggaccttactaacatggttcgagagctgctgatccagttctacaaatccacacgcttcaaacccactcggatcatctattaccgtggaggggtatccgagggacagatgaaacaggtagcttggccagaactaatagcaattcgaaaggcatgtattagtttggaagaagattaccggccaggaataacctatattgtggtgcagaaaagacatcacacacgactcttctgtgcagataaaacagagagggtggggaaaagtggcaatgtaccagcaggcactaccgtggatagcaccatcacacatccatctgagtttgacttttacctctgtagtcatgcaggaattcagggaaccagccgtccttcacattaccaggtcttgtgggatgacaactgcttcaccgcagatgagctccagttactaacttaccagctatgtcatacctatgtgcggtgcacacgctcagtctctattccagcccctgcctattatgcccgccttgtagcattcagagcaaggtatcatctggtggataaagatcatgacagtgcggaaggcagtcatgtgtcaggacaaagcaatggccgagatcctcaggccttggctaaagctgtgcagatccaccatgatacccagcacacgatgtattttgcctgagagtctcagaaaaagaactcaaccagtttggcacaccatgcaggctcaaaatgtttcaaacgcctactgcctctagagagagccaagttgacttcaggtggtcctctaccagcaactcagaatagttgcactgaatctatacttcgcagcactgtctgatgcatcaacaaaattgagccatttttttaaagtaatagatactcattgattatcttttctgatgcactggactgaatttttacctcatcatgcaaaggctaatcagcctgaactttctaaaggactttatgagaaaggtttctatggactattttgctagctgtggtgttcaccgcatccctctagtcttacaagagaagcttattccttttttctgtattcgtcgagtggggtatatgcataaatgggagagaaaaaccaatctacttcagttcagtgtaactatttaattgtgtgggtcaataggctttttaatggagatttctgacttcgccactgtaaatgcctttaacgagcattaacttttgaaagttttacagagttttattagttttactactttatgtattgatctctacagacttgtgctggtgcaagtacaggctgccaggcaattgcactatatttggctgcagattcagacaggcagttctcttatttggttgacttttgtgaatgtgtaacacatgtgatgcatgtcatggtgacagataacactgccatggtaaaaagtactcatgtttccccctctttgaaaaaaattagcttttagtatttttcagagttttcaaaaatgcccattttatgctgctgtgtggtttgttagatctaaatgattttttaacttttctcatagcaagttaactttggcaataaacattttttaaagtccctcctcttcctccccctgacagtgtagttttttagatgagatttcggtatgatttttatcagctatttcttacagatcataatctgacaatttttgaaactggtcagaaaaggcatatatttccatgccttttttttttttttttttttttttttgcggtacgcgggcctctcactgttgtggcctctcccgttgcggagcacaggctccggacgcgcaggctcagcggccatggctcacgggcccagccgctccgcggcatgtgggatcttcccagaccggggcacaaacctgtgtcccctgcattggcaggcggactctcaaccactgcgctaccagggaagccctccatgcctttttaaagaattctttttatctgttttatagtcacagttggtgtcctgtcactttgttttaaactaagctagaaccaggatgcttccttattgaataggctttgccagtccttaaggtaccttgagtgatgctgcaacttgcaaaaatgtaccagcatttaaaactttattccctgggaatcaaggttactcacacaattacttgtaatggaaattttttgcttctctttcaacctgaaatgtacttggtggggtttccttccttttattaaactaaaactgcatagaaaaggttgctttttcttaatagattctggattgcgttcacagggagagaggattcctttcttgtccaaacaaagggagttgatctaaagcaagcatcagttaaaatgtgggggaaaaggtattttgtatttagtgtagataatactttgtgaatggacaacagttacatagagtcttgatagttccagccagtgtttcccagcccaaattttactgacttggaattctctgtcctggaacctcaggagtgagagctgaaaggagggataaaaggcccagagccactccacatggctgaggaaggtgctgggggaagagatagatgcagtgtggtaaaacggttttgccacctctgtctggaaactgctggtgggggaaacactggatctaatggtgaaggatgttgcttgaactcattagctggtccaaatctgttaaactagccttctcaaaatcccagcaatataaagcactgtttttcttcagtcttgtaaacaagcttgtaaatacgttaaagtttacatttccatgtgctgttgatcagcagcgccaccagtgtttgctgagactggtctcagagttttataatgtatatggagtcctaaagctcattaagatacaagtgcagacgtccttgttctcttcatagagtgggatgaaagcaagctctgtaactgaggcacaacaaaggcaggagtgaagaagatggcagatgttaatttcttaagattttccttttttgcaaatacctcacttggacacacaaatcaggacacgttggtgaggggctggctgctgctttttattcacacttgttcagggagagcacagaaaatacccttcagcttggccaccctggatacaagaggaggaaaaaccgaagtttcctctaggaaaaggatgacttgctggagtccaggatgtgaagaactcttggtggctggctggctggccagtgggcaccccatctgcacttgagtgcctcggacttgcttgttaacaatgcacagaagaagcgtcacttctcaccatctcctggcatgtatggagcagggagcaaggcggagtgccaggaagccctgacgtgcttgcagacgggctatacactcgaccttgaactgtagtttgtaagacctcagtcagtcctagtacactggggcaaatcagtgtagtggtggaggaaaagccgggaggcctatttttataggaaaacagtacctttgaaggtttaatgctgccgttttggacaaaaggaaagaaatatagaagaattaggattgttggaaaaaacttgctgagcggtgaatctttaagaggtaattactgcagaatccgagttgcagcaatactcattgcaagcaggtctgaatgcatagttttaattcggcttgacaatttgaacacgttaaccccttgggactgactgaatcattatgcatgtgtcaatcaatgggaggtgtgcattctctagaagtaggtgtaggctgtttggtttttttttaatgcagcctgttcaggcactgtcatgtggtgtgaaagatttaaatgtagcaatgctaaagagttaacaattttgggataaggcacggggacattaaaagagtggtgaaaatccaaatgttgaaccaattatgttttgttgttgttgttagctgtagagtgaactagctgcccagctgtctgggcaggcagaacatattcattcttactgtaaattctatttgctgcttccaaaggtgatgatttacaagcagacatattctgtatggtctgtattttaggatctggtgcccagcctatatcagagcttacctacctggctcagctacctacccttcctgtgggaaaaggtaatccactgtttaaccaggctcaccctctccgccctgccctagcaaccctttgtggatgtgctgtaagattttcttgctcaatagcaaggtggtagctctgctttcattttaagaaagtggaggctgagggcattgtatcaatactgcttcaactccaaggatttttccttgtaaaattaaagggaagatcttgttatcgattaaccattttcgtaccccttgctattgacatattcatgctctttctatgtctagtagctgaaaaatgtttgcatttgttcatttgactaatggtgtcatttttgtttctatattgttaggcctgtaatgttctaaaatgtattttattaaatttggactggatgtatgtctctagcaatacgaggtactttctaaactattaagggaggggtggtatccccgagttgagataagatgatggttgtttaaattttgcaatttttttttggcctgcagggatattttgtgttcatgtgtccataaaagaataaattggcattcttgtgccaaacattg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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