2024-05-08 23:50:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_004265564 1439 bp mRNA linear MAM 02-MAR-2023 DEFINITION PREDICTED: Orcinus orca distal-less homeobox 5 (DLX5), mRNA. ACCESSION XM_004265564 VERSION XM_004265564.3 DBLINK BioProject: PRJNA854208 KEYWORDS RefSeq. SOURCE Orcinus orca (killer whale) ORGANISM Orcinus orca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064567) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Aug 2, 2022 this sequence version replaced XM_004265564.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_937001465.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1439 /organism="Orcinus orca" /mol_type="mRNA" /db_xref="taxon:9733" /chromosome="9" gene 1..1439 /gene="DLX5" /note="distal-less homeobox 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 8 Proteins" /db_xref="GeneID:101284473" CDS 207..1076 /gene="DLX5" /codon_start=1 /product="homeobox protein DLX-5" /protein_id="XP_004265612.1" /db_xref="GeneID:101284473" /translation="
MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAPHGYCSPTSASYGKALNPYQYQYHGVNGAAGSYPAKAYADYSYASPYHQYGGAYNRVPSATSQPEKEVAEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPPTSNQSPASSYLENSASWYPSAASSINSHLPPPGSLQHPLALASGTLY"
misc_feature 300..560 /gene="DLX5" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD:432536" misc_feature order(618..632,636..638,687..689,705..707,744..746, 750..755,762..767,771..779,783..788) /gene="DLX5" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 624..785 /gene="DLX5" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(624..626,633..635,753..755,762..767,774..776) /gene="DLX5" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" polyA_site 1439 /gene="DLX5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ccagcagtcagcctgccggagacagagcctccaagactcccagcctcctcctcgccgccgccgccgcctctcctcctcctcctcctcctcttcctcctcctccctcgctcccacagccatgtctgcttagaccagagcagccccacggccaactcgggcagccgccgccgcagagcagcaaggacaaccgccgccgccagcgagcgatgacaggagtgtttgacagaagggtccccagcatccgatccggcgacttccaagccccgttccagacgtccgcagccatgcaccatccgtctcaggaatcgccaactttgcccgagtcgtcggctaccgattccgactactacagccccacggggggagccccgcatggctactgctctcctacctcggcttcctacggcaaagcgctcaacccctaccagtaccagtaccacggcgtgaacggcgccgccggcagctaccccgccaaagcttacgccgactacagctacgccagcccctaccaccagtacggcggcgcctacaaccgcgtcccgagcgccaccagccagccagagaaagaagtggccgagcccgaggtgaggatggtgaacggcaaaccaaagaaagttcgtaaacccaggactatttattccagctttcagctggccgcgttacagagaaggtttcagaagactcagtacctcgccctgcccgaacgcgccgagctggccgcctccctgggactgacgcaaacacaggtgaaaatctggtttcagaacaaaagatccaagatcaagaagatcatgaaaaacggggagatgcccccggagcacagccccagctccagcgaccctatggcgtgtaactcgcctcagtctccggcggtgtgggagccccagggctcgtcccgctcgctcagccaccaccctcatgcccaccctccgacctccaaccagtcccccgcgtccagctacctggagaactcggcttcctggtacccgagcgcggccagctcaatcaattcccacctgccgccacccggctccttacagcacccgctggcgctggcctccgggacactctattagaccggccgctttctcttgctgtcttttttgggactactgtgtttttgctgttttagaaaatcatttaaaaaaaaaaaaggaattcatatggggaagtttggaaaacagaaacaaaaaagattcatgtgtaaagctttttttgcatgtaagttattgcatttcaaaggaccccgtcccccctttttttacagacgaactgtttttgcgcaactgtggacactatcaatagtgccttgaaatctatgacctcaaattttcaaaagacttttttcaatgttattttaaccatgtaaataagtgtagatagaagaattaaactgtatattctggataaataaaattatttcgaccatgaaagcaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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