2024-05-04 18:15:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002801027 2371 bp mRNA linear PRI 26-APR-2019 DEFINITION PREDICTED: Macaca mulatta retina and anterior neural fold homeobox 2 (RAX2), transcript variant X1, mRNA. ACCESSION XM_002801027 VERSION XM_002801027.3 DBLINK BioProject: PRJNA528504 KEYWORDS RefSeq. SOURCE Macaca mulatta (Rhesus monkey) ORGANISM Macaca mulatta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041772.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2019 this sequence version replaced XM_002801027.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2371 /organism="Macaca mulatta" /mol_type="mRNA" /isolate="AG07107" /bio_material="Coriell:AG07107" /db_xref="taxon:9544" /chromosome="19" /sex="female" /tissue_type="fibroblast" gene 1..2371 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 8 ESTs, 7 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:713929" CDS 182..874 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X1" /protein_id="XP_002801073.1" /db_xref="GeneID:713929" /translation="
MPAPVEGTDLPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSRQVGAMFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(401..415,419..421,470..472,488..490,527..529, 533..538,545..550,554..562,566..571) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(407..409,416..418,536..538,545..550,557..559) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 410..568 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
cgggcccgctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggccgtgacagccacagagaggggaagagaaaacagggacggtgacacacacagaaggaagaacagacagaggcccagcaggagacccccacaagcccgaggaggacagcccggggatgcagagcgcatgccggccccagtggagggaacagatctccccggagccgggaggcaagcctggggctcccctgccctgtccctgccggtagcccccccggccgtctccccgccatctgtcccgctgccgtctcgccaggtgggagccatgttcctgagcccgggcgagggcccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctcccactacccggatgtctacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaagagcggctggagtcaggctcgggtgccgtggcagccccgagacttcctgaggccccagcgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcatccttcgggcctcatgcctttgctcctaccttcgcagacggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggacagggcttggccgccagcctgagcctgctgccctcctgggccccctcctcggttcagcctgagagctggagacgtgccctggtgacagccaccacgccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccatcactggggagcgggaccagagacaggctgctgggtcccccgcccccatcctgtcccccacccgatcaccacccgtcctgctggcagcggaccggccccagtgtcaggcaggaggtgacccaagtattcctagccagggacggggaccctcctcccctcctggggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctgtgaggctgagtggcggggccgctgactctgtaagatcagtgtacatctctctgccgctcccactcctcatcagcagagctgcccgctctccaggctcccggtccccccgaaatgacagtaacggcagctcccgcgagcctgctctcctttcacggtgcacccaccacgtgagcgctcctctctctgttgcgccctggacctcgggcacagccgtcagcccattctacagagagggaaactggggctcaggcaggaagccaggtccccaaggttgcacggctaggagtgggtgaagctgcctttcagacccatcaccggcccccccatccgaggcacggcagcaggttctggagggagggtggggcctcgtgtggaggcgggctggtgctggctgtgtcgtcatcagcccctgttcctcgcgtccccacagaccccaggccccgtgcatgtcctccagccctgcggaggcacggctggcgtctgctctgtccaacccagttgcattgcccaagagctctgaggaaggaggctgtcgcggggctgagaacccgctgtgactggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggacagtcttggccagggccaccccctgagacagaagtgcggcaccagggcaggagctgcagtagctaccctcctcgtctccagcccgggctccccagatcactcccagatcaccggggcaccccatctccaggcggcacctcacacactagtcttgtggcccaacgcccagccaatgtcactgtgcaccaggcactggggacacggcagtaagcacaagaaagatttttttttctttttaacctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggacgctgaggtgggaggattgcttgagaccactctgggtgacatagcaagactcagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacacttgtcatcccagggacccgagaagctgaggcaggaggattgcttgagcccagaaggtcgaggctgagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaaaacaaacctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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