2024-11-01 07:57:11, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_001314580 1311 bp mRNA linear INV 01-MAR-2023 DEFINITION Trichomonas vaginalis G3 Ankyrin repeat family (TVAGG3_0863970), partial mRNA. ACCESSION XM_001314580 VERSION XM_001314580.2 DBLINK BioProject: PRJNA938429 BioSample: SAMN31107788 KEYWORDS RefSeq. SOURCE Trichomonas vaginalis G3 ORGANISM Trichomonas vaginalis G3 Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas. REFERENCE 1 (bases 1 to 1311) AUTHORS Sullivan,S.A., Carlton,J.M. and Schatz,M.C. TITLE A new chromosome-level assembly of the sexually transmitted parasite Trichomonas vaginalis JOURNAL Unpublished REFERENCE 2 (bases 1 to 1311) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-FEB-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1311) AUTHORS Sullivan,S.A., Carlton,J.M. and Schatz,M.C. TITLE Direct Submission JOURNAL Submitted (15-FEB-2022) Center for Genomics & Systems Biology, New York University, 12 Waverly Place, New York, NY 10003, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_067208). On Oct 20, 2022 this sequence version replaced XM_001314580.1. COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1311 /organism="Trichomonas vaginalis G3" /mol_type="mRNA" /strain="G3" /isolation_source="clinical isolate" /host="Homo sapiens" /culture_collection="ATCC:PRA-98" /db_xref="taxon:412133" /chromosome="VI" /geo_loc_name="United Kingdom: Beckenham" /collection_date="1973" gene <1..>1311 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="replaces TrichDB:TVAG_275690" /db_xref="GeneID:4760133" CDS 1..1311 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="eggNOG seed ortholog:5722.XP_001314610.1;replaces TrichDB:TVAG_275690" /codon_start=1 /product="Ankyrin repeat family" /protein_id="XP_001314610.1" /db_xref="GeneID:4760133" /translation="
MNWEIPLFILPQNAIVKKQPNFLFHMVQISMKRMNLEIPLFILPQNAIVKKQPNFLFHMVQISMKRMNFGRTALHIAAEHNRKETAELLISHGANVNEKDNFGRTALHIAAEHNSKETAKLLISHGANVNEKDELGNTALHIAAECNSKETAELLISHGANVNEKDNFGRTALHIAAECNSKETAKLLISHGANVNEKDELGNTALHIAAECNSKETAELLISHGANVNEKDNFGRTALHIAAECNSKETAKLLISHGANVNEKDELGNTALHIAAECNSKETAKLLISHGANVNEKDELGNTALHIAAECNSKETAELLISHGANVNEKDNFGRTALHIAAECNSKETAELLISHGANVNEKDNFGRTALHYAVKNKSKEIVELLISHGANINEKDELGNTALRKAAIFNSKKTAELLISHGANINEKDEYGNTC"
misc_feature 160..1014 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="Ankyrin repeat [Signal transduction mechanisms]; Region: ANKYR; COG0666" /db_xref="CDD:440430" misc_feature order(205..207,211..213,223..228,235..243,247..252, 262..264,271..273,298..300,304..306,310..312,322..327, 334..342,346..351,361..363,370..372,397..399,403..405, 409..411,421..426,433..441,445..450,460..462,469..471, 496..498) /locus_tag="TVAGG3_0863970" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature 205..300 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 304..399 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 403..498 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 502..597 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 604..696 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature order(607..609,619..624,631..639,643..648,658..660, 667..669,694..696,700..702,706..708,718..723,730..738, 742..747,757..759,766..768,793..795,799..801,805..807, 817..822,829..837,841..846,856..858,865..867,892..894) /locus_tag="TVAGG3_0863970" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature 700..795 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 799..894 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 901..993 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature order(904..906,916..921,928..936,940..945,955..957, 964..966,991..993,997..999,1003..1005,1015..1020, 1027..1035,1039..1044,1054..1056,1063..1065,1090..1092, 1096..1098,1102..1104,1114..1119,1126..1134,1138..1143, 1153..1155,1162..1164,1189..1191) /locus_tag="TVAGG3_0863970" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature 913..1191 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="Ankyrin repeats (3 copies); Region: Ank_2; pfam12796" /db_xref="CDD:463710" misc_feature 997..1092 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 1096..1191 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 1195..1290 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 1198..>1308 /locus_tag="TVAGG3_0863970" /old_locus_tag="TVAG_2v0863970" /note="Ankyrin repeats (many copies); Region: Ank_4; pfam13637" /db_xref="CDD:372654" ORIGIN
atgaattgggaaataccgctcttcatattgccgcagaatgcaatagtaaagaaacagccgaacttcttatttcacatggtgcaaatatcaatgaaaaggatgaatttggaaataccgctcttcatattgccgcagaatgcaatagtaaagaaacagccgaacttcttatttcacatggtgcaaatatcaatgaaaaggatgaatttcggaagaaccgctcttcatattgccgcagaacacaatagaaaagaaacagccgaacttcttatttcacatggtgcaaatgtcaatgaaaaagataatttcggaagaaccgctcttcatattgccgcagaacacaatagtaaagaaacagccaaacttcttatttcacatggtgcaaatgtcaatgaaaaggatgaattgggaaataccgctcttcatattgccgcagaatgcaatagtaaagaaacagccgaacttcttatttcacatggtgcaaatgtcaatgaaaaagataatttcggaagaaccgctcttcatattgccgcagaatgcaatagtaaagaaacagccaaacttcttatttcacatggtgcaaatgtcaatgaaaaggatgaattgggaaataccgctcttcatattgccgcagaatgcaatagtaaagaaacagccgaacttcttatttcacatggtgcaaatgtcaatgaaaaagataatttcggaagaaccgctcttcatattgccgcagaatgcaatagtaaagaaacagccaaacttcttatttcacatggtgcaaatgtcaatgaaaaggatgaattgggaaataccgctcttcatattgccgcagaatgcaatagtaaagaaacagccaaacttcttatttcacatggtgcaaatgtcaatgaaaaggatgaattgggaaataccgctcttcatattgccgcagaatgcaatagtaaagaaacagccgaacttcttatttcacatggtgcaaatgtcaatgaaaaagataatttcggaagaaccgctcttcatattgccgcagaatgcaatagtaaagaaacagccgaacttcttatttcacatggtgcaaatgtcaatgaaaaagataatttcggaagaaccgctcttcattatgcagttaaaaataagagtaaagaaatagtcgaacttctaatttcacatggtgcaaatatcaatgaaaaggatgaattgggaaataccgctcttcgtaaggcagctattttcaatagtaaaaaaacagcggaacttcttatttcacatggtgcaaatatcaatgaaaaagatgaatatggaaatacttgctga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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