2025-08-29 22:30:15, GGRNA.v2 : RefSeq release 231 (Jul, 2025)
LOCUS NR_199405 1420 bp rRNA linear BCT 28-APR-2025 DEFINITION Afipia dichlorophenoxyacetatis strain DD3 16S ribosomal RNA, partial sequence. ACCESSION NR_199405 VERSION NR_199405.1 DBLINK Project: 33175 BioProject: PRJNA33175 KEYWORDS RefSeq. SOURCE Afipia dichlorophenoxyacetatis ORGANISM Afipia dichlorophenoxyacetatis Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Nitrobacteraceae; Afipia. REFERENCE 1 AUTHORS Sawada,H., Sakai,Y., Takashima,Y., Naito,K., Horita,M. and Satou,M. TITLE Afipia dichlorophenoxyacetatis sp. nov., isolated from field soil in Japan, degrades 2,4-dichlorophenoxyacetic acid JOURNAL Int J Syst Evol Microbiol 75 (2) (2025) PUBMED 39928400 REMARK DOI:10.1099/ijsem.0.006672 REFERENCE 2 (bases 1 to 1420) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (24-APR-2025) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1420) AUTHORS Sawada,H. and Satou,M. TITLE Direct Submission JOURNAL Submitted (08-JUN-2023) Contact:Hiroyuki Sawada National Agriculture and Food Research Organization, Research Center of Genetic Resources; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan URL :https://www.naro.go.jp/english/laboratory/ngrc/index.html COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to LC770309.1:1-1420. FEATURES Location/Qualifiers source 1..1420 /organism="Afipia dichlorophenoxyacetatis" /mol_type="rRNA" /strain="DD3" /isolation_source="field soil" /culture_collection="MAFF:311804" /type_material="type strain of Afipia dichlorophenoxyacetatis" /db_xref="taxon:3116917" /geo_loc_name="Japan:Ibaraki" /collection_date="2005-08" /collected_by="Yoriko Sakai" rRNA <1..>1420 /product="16S ribosomal RNA" ORIGIN
agcgaacgctggcggcaggcttaacacatgcaagtcgagcgggcgtagcaatacgtcagcggcagacgggtgagtaacgcgtgggaacgtaccttttggttcggaacaacacagggaaacttgtgctaataccgaataagcccttacggggaaagatttatcgccgaaagatcggcccgcgtctgattagctagttggtgaggtaacggctcaccaaggcgacgatcagtagctggtctgagaggatgatcagccacattgggactgagacacggcccaaactcctacgggaggcagcagtggggaatattggacaatgggcgcaagcctgatccagccatgccgcgtgagtgatgaaggccctagggttgtaaagctcttttgtgcgggaagataatgacggtaccgcaagaataagccccggctaacttcgtgccagcagccgcggtaatacgaagggggctagcgttgctcggaatcactgggcgtaaagggtgcgtaggcgggtctttaagtcaggggtgaaatcctggagctcaactccagaactgcctttgatactgaagatcttgagttcgggagaggtgagtggaactgcgagtgtagaggtgaaattcgtagatattcgcaagaacaccagtggcgaaggcggctcactggcccgatactgacgctgaggcacgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgaatgccagccgttggaaagtttacttttcagtggcgcagttaacgctttaagcattccgcctggggagtacggtcgcaagattaaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgacgcaacgcgcagaaccttaccagcccttgacatcccggtcgcggtttccagagatggattccttcagttcggctggaccggtgacaggtgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccccgtccttagttgctaccatttagttgagcactctaaggagactgccggtgataagccgcgaggaaggtggggatgacgtcaagtcctcatggcccttacgggctgggctacacacgtgctacaatggcggtgacaatgggaagcaaaggcgcaagccctagcaaatctcaaaaagccgtctcagttcggattgggctctgcaactcgagcccatgaagttggaatcgctagtaatcgtggatcagcatgccacggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagttggttttacctgaagacggtgcgctaaccgaaagggggcagccggccacggtagggtcagcgactggggtgaagtcgtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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