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2024-03-28 17:38:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_205249               1332 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus homeobox D12 (HOXD12), mRNA.
ACCESSION   NM_205249
VERSION     NM_205249.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1332)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 1332)
  AUTHORS   Kamiyama N, Seki R, Yokoyama H and Tamura K.
  TITLE     Heterochronically early decline of Hox expression prior to
            cartilage formation in the avian hindlimb zeugopod
  JOURNAL   Dev Growth Differ 54 (6), 619-632 (2012)
   PUBMED   22708793
  REMARK    GeneRIF: Expression of Hoxd11/Hoxd12 in the chick hindlimb
            decreased and disappeared from the presumptive zeugopod region
            before cartilage formation.
REFERENCE   3  (bases 1 to 1332)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1332)
  AUTHORS   Kataoka K, Yoshitomo-Nakagawa K, Shioda S and Nishizawa M.
  TITLE     A set of Hox proteins interact with the Maf oncoprotein to inhibit
            its DNA binding, transactivation, and transforming activities
  JOURNAL   J Biol Chem 276 (1), 819-826 (2001)
   PUBMED   11036080
REFERENCE   5  (bases 1 to 1332)
  AUTHORS   Mackem S and Mahon KA.
  TITLE     Ghox 4.7: a chick homeobox gene expressed primarily in limb buds
            with limb-type differences in expression
  JOURNAL   Development 112 (3), 791-806 (1991)
   PUBMED   1682126
REFERENCE   6  (bases 1 to 1332)
  AUTHORS   Izpisua-Belmonte JC, Tickle C, Dolle P, Wolpert L and Duboule D.
  TITLE     Expression of the homeobox Hox-4 genes and the specification of
            position in chick wing development
  JOURNAL   Nature 350 (6319), 585-589 (1991)
   PUBMED   1673231
REFERENCE   7  (bases 1 to 1332)
  AUTHORS   Nohno T, Noji S, Koyama E, Ohyama K, Myokai F, Kuroiwa A, Saito T
            and Taniguchi S.
  TITLE     Involvement of the Chox-4 chicken homeobox genes in determination
            of anteroposterior axial polarity during limb development
  JOURNAL   Cell 64 (6), 1197-1205 (1991)
   PUBMED   1672266
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAENSK010000236.1.
            
            On Sep 23, 2021 this sequence version replaced NM_205249.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X62019.1, HAEL01007512.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992604, SAMEA3109051
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-569               JAENSK010000236.1  8580089-8580657     c
            570-1332            JAENSK010000236.1  8579055-8579817     c
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="7"
                     /map="7"
     gene            1..1332
                     /gene="HOXD12"
                     /note="homeobox D12"
                     /db_xref="CGNC:7046"
                     /db_xref="GeneID:396178"
     exon            1..569
                     /gene="HOXD12"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..808
                     /gene="HOXD12"
                     /note="Ghox 4.7; homeo box D12; chox-4F; chox-4.7;
                     ghox-4.7; homeobox protein Hox-4F; homeobox protein
                     Hox-4.7; Hox D12"
                     /codon_start=1
                     /product="homeobox protein Hox-D12"
                     /protein_id="NP_990580.1"
                     /db_xref="CGNC:7046"
                     /db_xref="GeneID:396178"
                     /translation="
MCDRSLYRSGYVGSLLNLQSPDSFYFPNLRANGSQLAALPTISYPRSSIPWTCPSPCAAQPQGHAFGGAAQPYLPGSVPISISSNSNKECLEENSKYYAHDASSKQEERCRQRQSFANDPTITHAANLKPAKYDHSSLPRSLHGSAALFEVNSCTSSLKEDIKNSVNLNLTVQPAAVQSCLRPSVQDGLPWCPTQGRSRKKRKPYTKQQIAELENEFLLNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVMREQALSMY"
     misc_feature    order(602..616,620..622,671..673,689..691,728..730,
                     734..739,746..751,755..763,767..772)
                     /gene="HOXD12"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    608..769
                     /gene="HOXD12"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(608..610,617..619,737..739,746..751,758..760)
                     /gene="HOXD12"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            570..1332
                     /gene="HOXD12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gttggaaatgtgtgatcgcagtctctacagatctggctacgttggttctctcttgaacttgcaatctccagattccttttattttcccaatttgcgggctaatggcagtcagttggcggctctgcccaccatttcctacccccggagctcgatcccgtggacgtgccccagtccgtgcgcagctcagccgcagggccacgcgttcggcggcgcggcgcagccgtacctccccggctccgttccaatcagcatcagctccaacagcaacaaagagtgcctggaagaaaacagtaaatattacgcccacgacgcgagctccaaacaagaggaaagatgcaggcagaggcaatctttcgcaaatgacccaactattactcacgcagccaacttaaagcccgcaaagtatgaccactcgagcctgccgaggagcttgcacggctcggccgctctttttgaagtgaattcctgcacttccagcctaaaggaggacatcaagaattcggtcaacttgaacctgacagttcagcccgcggcagtccagtcatgcctcagaccttcagtgcaggatggtttgccttggtgccccacccaggggagatcgcgaaagaaacggaaaccgtacacaaaacagcaaatcgccgaattggaaaacgagtttctcctcaatgagtttattaaccgacagaagaggaaagaactatcaaacagactgaatttaagcgaccagcaagtgaaaatttggtttcagaaccgacgaatgaaaaagaaaagagtggtaatgcgcgagcaggcgctctctatgtactagcgcggcgcccgcccgttcccgcatgaacttgcgttcgccccgtagagtagcgtgtggtcgcggctgcgaggcgggagctgggtgggttttcccctttaagccgagctctcggaacgcgtaggatccccgcgtgcgtcggcaaccgctgagctcttaggcagagcgaagaagacgagccagcccagcactgaaacccgtattatcagcttttccccctttctttctccttttatatagatcttctccctcttctaaccccctctttccccggagaacgtgcggcgctaaactaaaatcgatgcctttttaactgtatgtaaacaccactttgcaggaaaaaaaaaaaaaaaaaagaataaaagaataatgcctagtaaagacgtctgtaaatgccggctggtcccttcatgtgttccccgcttctgaaggcgagcatgcggcgctcgcgtgttttgtggtttggaataacctgttggagcacagatcgcacaaagcggttaccaaataaacctttttagttttca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]