LOCUS       NM_111013               1440 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana homeobox 1 (HB-1), mRNA.
ACCESSION   NM_111013
VERSION     NM_111013.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1440)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1440)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1440)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Apr 24, 2008 this sequence version replaced NM_111013.3.
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1440
                     /gene="HB-1"
                     /locus_tag="AT3G01470"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX 1; ATHB-1;
                     ATHB1; F4P13.2; F4P13_2; HAT5; HD-ZIP-1; homeobox 1;
                     HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5"
                     /note="Encodes a homeodomain leucine zipper class I
                     (HD-Zip I) transcriptional activator involved in leaf
                     development."
                     /db_xref="Araport:AT3G01470"
                     /db_xref="GeneID:821138"
                     /db_xref="TAIR:AT3G01470"
     CDS             370..1188
                     /gene="HB-1"
                     /locus_tag="AT3G01470"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX 1; ATHB-1;
                     ATHB1; F4P13.2; F4P13_2; HAT5; HD-ZIP-1; homeobox 1;
                     HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL231664.1,INSD:AV519756.1,INSD:EL312439.1,
                     INSD:AV552349.1,INSD:CD531827.1,INSD:EH972323.1,
                     INSD:EH892020.1,INSD:EG467919.1,INSD:EL261428.1,
                     INSD:AV795885.1,INSD:EG467920.1,INSD:EH856621.1,
                     INSD:EL053174.1,INSD:BP632451.1,INSD:CD534515.1,
                     INSD:BP609161.1,INSD:EL289109.1,INSD:CD533700.1,
                     INSD:AV439953.1,INSD:AV539075.1,INSD:EH846345.1,
                     INSD:BP574544.1,INSD:AV548906.1,INSD:EL048261.1,
                     INSD:EL033456.1,INSD:EL052565.1,INSD:EH881900.1,
                     INSD:BP800357.1,INSD:BP634249.1,INSD:AV558145.1,
                     INSD:EH856770.1,INSD:BP599794.1,INSD:EL301364.1,
                     INSD:N37129.1,INSD:EL089084.1,INSD:EH902634.1,
                     INSD:H37532.1,INSD:AV441876.1,INSD:BP602688.1,
                     INSD:EL305125.1,INSD:CK119587.1,INSD:DR751603.1,
                     INSD:BP610019.1,INSD:AV547756.1,INSD:CD534185.1,
                     INSD:BP843921.1,INSD:EL333214.1,INSD:BP613699.1,
                     INSD:BP608313.1,INSD:BP789497.1,INSD:EH985153.1,
                     INSD:EL001953.1,INSD:BP569833.1,INSD:EL172361.1,
                     INSD:EL323783.1,INSD:BP600575.1,INSD:EL043243.1,
                     INSD:BP852598.1,INSD:EH873870.1,INSD:EL227848.1,
                     INSD:EH859321.1,INSD:AV546133.1,INSD:AI997961.1,
                     INSD:BP788785.1,INSD:BX840984.1,INSD:DR751610.1,
                     INSD:AA713131.1,INSD:EL166363.1,INSD:BP605611.1,
                     INSD:AV797096.1,INSD:BU636361.1,INSD:AV815371.1,
                     INSD:EL013676.1,INSD:EL252257.1,INSD:BP634248.1,
                     INSD:N65401.1,INSD:T42311.1,INSD:AV551422.1,
                     INSD:BP852220.1,INSD:AV521515.1,INSD:BP614211.1,
                     INSD:T88663.1,INSD:EH944013.1,INSD:EL030681.1,
                     INSD:AV813420.1,INSD:DR278241.1,INSD:BP601037.1,
                     INSD:CD533698.1,INSD:BP615266.1,INSD:EL208966.1,
                     INSD:BP620441.1,INSD:BP576742.1,INSD:CD532303.1,
                     INSD:EL330120.1,INSD:EL192623.1,INSD:EL161153.1,
                     INSD:EG457822.1,INSD:DR278240.1,INSD:BP603040.1,
                     INSD:BP803921.1,INSD:BP610073.1,INSD:EH897075.1,
                     INSD:EL172868.1,INSD:AA395012.1,INSD:EL261107.1,
                     INSD:EL075913.1,INSD:AV524103.1,INSD:EL112787.1,
                     INSD:EG458038.1,INSD:DR382911.1,INSD:BP798732.1,
                     INSD:EL025857.1,INSD:EL245643.1,INSD:CB254248.1,
                     INSD:BP617675.1,INSD:EL133100.1,INSD:EL160387.1,
                     INSD:T42837.1,INSD:DR751611.1,INSD:AV564536.1,
                     INSD:AV539612.1,INSD:BP583928.1,INSD:EH869561.1,
                     INSD:EL339416.1,INSD:AV519253.1,INSD:EL192506.1,
                     INSD:AV819290.1,INSD:T23024.1,INSD:AI099655.1,
                     INSD:EL019347.1,INSD:EH798720.1,INSD:H37330.1,
                     INSD:CD528958.1,INSD:AV519469.1,INSD:EL080180.1,
                     INSD:BP613231.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:BX823491.1,INSD:AY098972.1,INSD:BX822367.1,
                     INSD:BX823237.1,INSD:AY058188.1,INSD:X58821.1,
                     INSD:M90416.1"
                     /note="homeobox 1 (HB-1); FUNCTIONS IN: sequence-specific
                     DNA binding, DNA binding, transcription activator
                     activity, protein homodimerization activity,
                     sequence-specific DNA binding transcription factor
                     activity; INVOLVED IN: response to salt stress, response
                     to blue light, positive regulation of transcription,
                     regulation of transcription, DNA-dependent, leaf
                     morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: stem,
                     fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s:
                     Homeobox, conserved site (InterPro:IPR017970), Homeobox
                     (InterPro:IPR001356), Homeodomain-like
                     (InterPro:IPR009057), Helix-turn-helix motif, lambda-like
                     repressor (InterPro:IPR000047), Leucine zipper,
                     homeobox-associated (InterPro:IPR003106),
                     Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis
                     thaliana protein match is: homeobox protein 16
                     (TAIR:AT4G40060.1); Has 12515 Blast hits to 12478 proteins
                     in 547 species: Archae - 0; Bacteria - 0; Metazoa - 9969;
                     Fungi - 258; Plants - 2039; Viruses - 5; Other Eukaryotes
                     - 244 (source: NCBI BLink)."
                     /codon_start=1
                     /product="homeobox 1"
                     /protein_id="NP_186796.1"
                     /db_xref="GeneID:821138"
                     /db_xref="TAIR:AT3G01470"
                     /db_xref="Araport:AT3G01470"
                     /translation="

MESNSFFFDPSASHGNSMFFLGNLNPVVQGGGARSMMNMEETSKRRPFFSSPEDLYDDDFYDDQLPEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQETANEPPGQVPEPNQLDPVYINAAAIKTEDRLSSGSVGSAVLDDDAPQLLDSCDSYFPSIVPIQDNSNASDHDNDRSCFADVFVPTTSPSHDHHGESLAFWGWP"

     misc_feature    565..732
                     /gene="HB-1"
                     /locus_tag="AT3G01470"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX 1; ATHB-1;
                     ATHB1; F4P13.2; F4P13_2; HAT5; HD-ZIP-1; homeobox 1;
                     HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(571..579,583..585,634..636,652..654,691..693,
                     697..702,709..714,718..726,730..735)
                     /gene="HB-1"
                     /locus_tag="AT3G01470"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX 1; ATHB-1;
                     ATHB1; F4P13.2; F4P13_2; HAT5; HD-ZIP-1; homeobox 1;
                     HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(571..573,580..582,700..702,709..714,721..723)
                     /gene="HB-1"
                     /locus_tag="AT3G01470"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX 1; ATHB-1;
                     ATHB1; F4P13.2; F4P13_2; HAT5; HD-ZIP-1; homeobox 1;
                     HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    736..861
                     /gene="HB-1"
                     /locus_tag="AT3G01470"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX 1; ATHB-1;
                     ATHB1; F4P13.2; F4P13_2; HAT5; HD-ZIP-1; homeobox 1;
                     HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
ORIGIN      

gagacgctcacattgcaaaaacaaaaccaacaaggaacttgtctctctctctggctctctttctcttaacgtgatcataacgtgattcgaaaattggatatagataggtttcttgttggatcttgatccctctggaaaaggaggggagaatagcagttcatgatgggattttgtatctgcccgttggagtcacctgcgagattactatggagtacaagcttcttccgccataagatcatgatcttctaatccttcctacttcttcccatctttttaatcatcttctcgctatctctgcttcctctttctctctgtttcctctttctcagaactcagaagtagttgttgttttatttctgttgatcaaaaatggaatccaattcgtttttcttcgatccatctgcttcacacggcaacagcatgttcttccttgggaatctcaatcccgtcgtccaaggaggaggagcaagatcgatgatgaacatggaggaaacttcgaagcgaaggcccttctttagctcccctgaggatctctacgacgatgacttttacgacgaccagttgcctgaaaagaagcgtcgcctcactaccgaacaagtgcatctgctggagaaaagcttcgagacagagaacaagctagagcctgaacgcaagactcagcttgccaagaagcttggtctacagccaaggcaagtggctgtctggtttcagaatcgccgagctcgttggaaaacaaaacagcttgagagagactacgatcttctcaagtccacttacgaccaacttctttctaactacgactccatcgtcatggacaacgataagctcagatccgaggttacttccctgaccgaaaagcttcagggcaaacaagagacagctaatgaaccacctggtcaagtgcccgaaccaaaccaacttgatccggtttacattaatgcggcagcaatcaaaaccgaggaccggttaagttcagggagcgttgggagcgcggtactagacgacgacgcacctcaactactagacagctgtgactcttacttcccaagcatcgtacccatccaagacaacagcaacgccagtgatcatgacaatgaccggagctgtttcgccgacgtctttgtgcccaccacttcaccgtcgcacgatcatcacggtgaatcattggctttctggggatggccttagaaaaccactctgataataaatgtgtgtttatttaagttcaagagtcatcttcttgttgtttccatgttgacgataattgttgactcgtggaataattccgctgttcaacggtatttttatcagttgcattatatgcttttatgaaatcaagtcaatgcagtgttctgatttgaagttaaaaagattgatcttcttcagaaagcctctctagagagaaagagagagattataaagaataattgaagtttccgt

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