LOCUS       NM_105760               1099 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana homeobox-leucine zipper protein 18 (HB18),
            mRNA.
ACCESSION   NM_105760
VERSION     NM_105760.6
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1099)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1099)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1099)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1099)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_105760.5.
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1099
                     /gene="HB18"
                     /locus_tag="AT1G70920"
                     /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper
                     protein 18"
                     /db_xref="Araport:AT1G70920"
                     /db_xref="GeneID:843431"
                     /db_xref="TAIR:AT1G70920"
     CDS             233..853
                     /gene="HB18"
                     /locus_tag="AT1G70920"
                     /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper
                     protein 18"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AU230261.1,INSD:BP817458.1,INSD:AU238999.1,
                     INSD:DR382715.1,INSD:EH931471.1,INSD:DR289509.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AK118149.1,INSD:BT005594.1,INSD:AK175965.1,
                     INSD:AK175837.1"
                     /note="homeobox-leucine zipper protein 18 (HB18);
                     FUNCTIONS IN: DNA binding, sequence-specific DNA binding
                     transcription factor activity; INVOLVED IN: regulation of
                     transcription, DNA-dependent, regulation of transcription;
                     LOCATED IN: nucleus, chloroplast; EXPRESSED IN: hypocotyl,
                     root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS
                     InterPro DOMAIN/s: Homeobox, conserved site
                     (InterPro:IPR017970), Homeobox (InterPro:IPR001356),
                     Homeodomain-like (InterPro:IPR009057), Leucine zipper,
                     homeobox-associated (InterPro:IPR003106),
                     Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis
                     thaliana protein match is: homeobox-leucine zipper protein
                     17 (TAIR:AT2G01430.1); Has 12733 Blast hits to 12688
                     proteins in 617 species: Archae - 0; Bacteria - 0; Metazoa
                     - 10651; Fungi - 202; Plants - 1634; Viruses - 5; Other
                     Eukaryotes - 241 (source: NCBI BLink)."
                     /codon_start=1
                     /product="homeobox-leucine zipper protein 18"
                     /protein_id="NP_177248.3"
                     /db_xref="Araport:AT1G70920"
                     /db_xref="GeneID:843431"
                     /db_xref="TAIR:AT1G70920"
                     /translation="

MALSPNSSSLDLTISIPSFSPSPSLGDHHGMRDFDINQTPKTEEDREWMIGATPHVNEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALKPSSTSALTMCPRCERVTDAVDNDSNAVQEGAVLSSRSRMTISSSSSLC"

     misc_feature    428..598
                     /gene="HB18"
                     /locus_tag="AT1G70920"
                     /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper
                     protein 18"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(431..445,449..451,500..502,518..520,557..559,
                     563..568,575..580,584..592,596..601)
                     /gene="HB18"
                     /locus_tag="AT1G70920"
                     /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper
                     protein 18"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(437..439,446..448,566..568,575..580,587..589)
                     /gene="HB18"
                     /locus_tag="AT1G70920"
                     /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper
                     protein 18"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    602..733
                     /gene="HB18"
                     /locus_tag="AT1G70920"
                     /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper
                     protein 18"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     cl23880"
                     /db_xref="CDD:451592"
ORIGIN      

atttctcttatgcttaattccttattccatattccacattccacgcttatcacaaaatctttctcctttgtctcgcttttttcttttgttctttcacatgtgtatatacacacagaacacacacttacatttctattatcatataaaacttcaactttaccttttatcttccaaaaaaaacactatcttcttcatcaaattctcttgattctgtttctttttatcctcctccatggccctctcacctaattcaagctctttagatttaacaatctcaattccgagcttctctccatctccttcacttggtgatcatcacgggatgagagattttgacataaaccaaacaccaaagacggaagaagatcgtgagtggatgatcggtgcaacaccacatgtcaacgaagatgatagcaactcgggtggccggcggcgcaaaaagctccgtctaacgaaagaacaatcacatcttcttgaagagagtttcatacaaaaccataccttaacccctaagcaaaaaaaagatttggccacctttttgaagcttagtcaaaggcaagttgaggtgtggtttcaaaatcgaagagctcggagtaagctaaagcacacggaaatggaatgtgagtatctaaaaagatggttcggatcgttgaaggaacaaaatcgacggctacaaatagaagttgaagaactacgagcgctaaagccatcatcgacctcggctttaaccatgtgtcctcggtgtgaacgtgtgactgatgcagtagataatgactctaatgccgttcaagagggggcagttcttagcagccggtcacggatgacaatttcctcttcctcttccctctgttgactggtttggtcgaagtcaaaagtcaaaagataaacgcctgtttcggggtaaaaagcaaagatttgatgatgattaggaggattttgtgtatagtttgctaattatttattacaaatttacaaaccagtgaggaaaaaagataatttaattctcgatctttaattagctttttgtgttatttattcataattttatttttcgtgtttaaccaaaaaatagacaaaacaaatattgcttttcgtgtcc

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