GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-28 20:45:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001329299            1796 bp    mRNA    linear   VRT 16-APR-2022
DEFINITION  Ictalurus punctatus claudin e (cldne), mRNA.
ACCESSION   NM_001329299 XM_017495999
VERSION     NM_001329299.1
KEYWORDS    RefSeq.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 1796)
  AUTHORS   Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z.
  TITLE     Claudin multigene family in channel catfish and their expression
            profiles in response to bacterial infection and hypoxia as revealed
            by meta-analysis of RNA-Seq datasets
  JOURNAL   Comp Biochem Physiol Part D Genomics Proteomics 13, 60-69 (2015)
   PUBMED   25681604
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from KM870804.1.
            
            On Jul 8, 2016 this sequence version replaced XM_017495999.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: KM870804.1 [ECO:0000345]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /chromosome="20"
                     /map="20"
     gene            1..1796
                     /gene="cldne"
                     /gene_synonym="CLDN28a"
                     /note="claudin e"
                     /db_xref="GeneID:108280691"
     exon            1..1796
                     /gene="cldne"
                     /gene_synonym="CLDN28a"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    598..600
                     /gene="cldne"
                     /gene_synonym="CLDN28a"
                     /note="upstream in-frame stop codon"
     CDS             619..1257
                     /gene="cldne"
                     /gene_synonym="CLDN28a"
                     /note="claudin 28a"
                     /codon_start=1
                     /product="claudin e"
                     /protein_id="NP_001316228.1"
                     /db_xref="GeneID:108280691"
                     /translation="
MVSMCRQMLGYGLGIIGFLGTIIVCALPMWKVTAFIGANIVTAQIIWEGLWMTCVMQSTGQMQCKIYDSMLALPQDLQAARALIIISIIVCLFAMILGINGGKCTNFVENESKKIKVAIASGVTFIIAGVLCLIPVCWSTNTIIQDFYSPMVNSAQKRELGAALYIGFGTAALLILGGGLLCSSCPPQEEKNYNNGYKYSQPRSIANSKAYV"
     misc_feature    628..1119
                     /gene="cldne"
                     /gene_synonym="CLDN28a"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      
aataccacaaattaaacaaacatctaagtatattactttcacaaattcttacaaaatgcaatcctgtttattacaacactaaaacacttgtaataaatagcctaactgcctcaaaggagcatcatcctttaaaaatgctagatatttctactggaaaaatatactttgtcagtatgttgagcacaagcatttttttctctttttttttgcactaacagaagtaacatgctcatgaaatgttgtaagatatttggtaactgcacacatgaaccaggtttaaaatggggaaacaaatgtaataggacataaacttttatttattgatagatataagtttcacctctctttagaggggatttttgcttttctgctgatgaatgacctaatttaaagtgcatctcatcgaaactgtcttgtcttcagtgtctcagtggaatctcgtcaggcctgaaacaaagtatgacaactggtatcagtacaaactattaactccacctttcaaaaggcaccatataacctgctggttaaaggaagttcctcactgttctgccatcgtagcacatatacagaagaccagacactttcacagcagtgagttagcactcaaaagaaactaaaatggtgtccatgtgccgccagatgctgggctatggcctgggcatcattggcttcttggggaccatcattgtttgcgcccttcccatgtggaaggtaacagcattcatcggagccaacattgtgacggcgcagatcatctgggaggggttgtggatgacctgtgtcatgcagagtacaggccagatgcagtgtaagatctatgactccatgctggcactgccccaggatctgcaggccgcccgagctctgatcatcatctccatcatcgtctgcctgttcgcaatgatcctgggaatcaatggaggcaagtgcaccaactttgtggagaatgagagcaaaaagatcaaagtggctattgccagtggcgtcaccttcatcattgctggagtcctgtgtctcatcccggtctgctggtccaccaacaccatcatccaggacttctacagccccatggtcaacagtgctcagaagagggagcttggggctgcactctacattggctttggcactgctgcacttttgattctcggtggaggtcttctctgcagttcctgtccaccgcaagaggagaagaattacaacaatggctacaagtactcccagccacgttccattgccaatagcaaagcctacgtctaaccgtagaagcaccaggcaaagactttttctgctctctcccttttgtcgaacatttactgaaaacagatatgtgactattccacagtgtgactttaaaatgtattaaaacttaaaactatttataatatgcataaggataatgttaaaacagatcctgaatagaagtataaagtcattaggattacagaatgtgattaactaaaataataagtgtggaacaaatagtatacttattcaaaatgtatagctgaaaaggactgtatttttttttcttcattatttgtttcatcaatttgttgatgtaagaattgctgatcaacaaatctggcagtgtactttggaaatttgcacattaaaattaaactgttgtactataatgagaagggttttgggttttttttttgtatttttctgaatatgcttgaatctgggccctttaagtgttcactgaggcattcagaggaaaagtgtttgttaatgtatacacaggtttttatgttgtccaatactaagagttgtttttttgttgttgttgttgt
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]