2024-04-19 12:11:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001329288 1128 bp mRNA linear VRT 19-FEB-2023 DEFINITION Ictalurus punctatus claudin 18 (cldn18), mRNA. ACCESSION NM_001329288 XM_017491338 VERSION NM_001329288.1 KEYWORDS RefSeq. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 1128) AUTHORS Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z. TITLE Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets JOURNAL Comp. Biochem. Physiol. Part D Genomics Proteomics 13, 60-69 (2015) PUBMED 25681604 REFERENCE 2 (bases 1 to 1128) AUTHORS Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E and Liu Z. TITLE Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote JOURNAL BMC Genomics 13, 595 (2012) PUBMED 23127152 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from KM870797.1. On Jul 8, 2016 this sequence version replaced XM_017491338.1. ##Evidence-Data-START## Transcript exon combination :: KM870797.1, GEHJ01096245.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00739092, SAMN00774075 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1128 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /chromosome="17" /map="17" gene 1..1128 /gene="cldn18" /gene_synonym="CLDN18b" /note="claudin 18" /db_xref="GeneID:108278145" exon 1..389 /gene="cldn18" /gene_synonym="CLDN18b" /inference="alignment:Splign:2.1.0" misc_feature 137..139 /gene="cldn18" /gene_synonym="CLDN18b" /note="upstream in-frame stop codon" CDS 170..883 /gene="cldn18" /gene_synonym="CLDN18b" /note="claudin 18b" /codon_start=1 /product="claudin 18" /protein_id="NP_001316217.1" /db_xref="GeneID:108278145" /translation="
MATSGLQIGGFLLGVIGVAAVIAATAMNNWSTQDRQGDVVTAVYTYKGLWQDCEVSTSGFTECRPLYGLLGYSAQFQAVRAMMIVSVILGIIAGVISLFSLKCFKMGSTEDSTKAKMTLTAGIMFIIAGICGITGASIYANQIVASFMMTTYNPNYGGMNQMQMEGMGMSMVNRFTFGPPLFVAWIGGGMLLIGGVLKCVAFKGLHAETIPYKTVAYKVPAQSRSAEESSERGQKYV"
misc_feature 179..724 /gene="cldn18" /gene_synonym="CLDN18b" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 390..554 /gene="cldn18" /gene_synonym="CLDN18b" /inference="alignment:Splign:2.1.0" exon 555..690 /gene="cldn18" /gene_synonym="CLDN18b" /inference="alignment:Splign:2.1.0" exon 691..801 /gene="cldn18" /gene_synonym="CLDN18b" /inference="alignment:Splign:2.1.0" exon 802..1128 /gene="cldn18" /gene_synonym="CLDN18b" /inference="alignment:Splign:2.1.0" ORIGIN
gttcacacaaaagtacgaacgtgcacgttcacgttcatgtccacacaaacgcccacactcacgccgagataaaaccttgaggtccctccctgttcagccttactttacctgagagtttcttactgtccactttagctgaagtccccaggaacctaagagaagattaaacatggcgacctccgggttacagatcggcggattcctgttaggagtcatcggagtggctgcggtcatagccgcaaccgcaatgaacaactggagcacgcaggaccgccagggcgatgtcgtcaccgccgtgtacacgtacaaaggcctgtggcaggactgcgaggtgtccacgtctgggttcacagagtgccggccgctctacggccttctgggatactcagcccagttccaggcagtgagagcgatgatgatagtcagcgttatcttgggtataatcgctggcgtgatctcgttgttctctctgaaatgtttcaaaatgggaagcaccgaggattcgaccaaagccaaaatgacgctgacggcaggcatcatgttcattattgcaggtatctgtggcatcaccggagcttccatttatgccaatcagatcgtagccagcttcatgatgaccacctacaaccctaattatggcgggatgaaccagatgcagatggaaggaatgggaatgtctatggttaacaggttcacattcggaccacccctctttgtggcctggatcggaggaggcatgctgctcataggaggagttttaaagtgtgtggccttcaaaggcttgcacgccgagacgataccctataagacagtggcgtataaagtaccagctcagtcgagatcagcagaggagagcagtgagcgaggacagaaatatgtttaaaactcctctgatcctccaggatttacccccgtttcttactgactctgttccaccttcatttcctgtccctctctctctgccccccccccagagcagtataataaacacaagatttgataataaatgagttattatggtaaactcgctgcttctttgcactaacacactgtttttcctctaaacgtattttcataatcaacatttggtttgcttttttttgtaaacaataaataaaattggaatac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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