LOCUS       NM_001329277            1266 bp    mRNA    linear   VRT 19-FEB-2023
DEFINITION  Ictalurus punctatus claudin 10e (cldn10e), mRNA.
ACCESSION   NM_001329277 XM_017480760
VERSION     NM_001329277.1
KEYWORDS    RefSeq.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z.
  TITLE     Claudin multigene family in channel catfish and their expression
            profiles in response to bacterial infection and hypoxia as revealed
            by meta-analysis of RNA-Seq datasets
  JOURNAL   Comp Biochem Physiol Part D Genomics Proteomics 13, 60-69 (2015)
   PUBMED   25681604
REFERENCE   2  (bases 1 to 1266)
  AUTHORS   Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang
            Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E and
            Liu Z.
  TITLE     Efficient assembly and annotation of the transcriptome of catfish
            by RNA-Seq analysis of a doubled haploid homozygote
  JOURNAL   BMC Genomics 13, 595 (2012)
   PUBMED   23127152
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from KM870794.1.
            
            On Jul 8, 2016 this sequence version replaced XM_017480760.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KM870794.1, JT226071.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04372580 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /chromosome="12"
                     /map="12"
     gene            1..1266
                     /gene="cldn10e"
                     /gene_synonym="si:busm1-52i16.2"
                     /note="claudin 10e"
                     /db_xref="GeneID:108272376"
     exon            1..620
                     /gene="cldn10e"
                     /gene_synonym="si:busm1-52i16.2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    371..373
                     /gene="cldn10e"
                     /gene_synonym="si:busm1-52i16.2"
                     /note="upstream in-frame stop codon"
     CDS             389..1150
                     /gene="cldn10e"
                     /gene_synonym="si:busm1-52i16.2"
                     /codon_start=1
                     /product="claudin 10e"
                     /protein_id="NP_001316206.1"
                     /db_xref="GeneID:108272376"
                     /translation="

MEVRETQIWGFLLTVLGWIFIACSLAMEGWKVAAAGGQGGSSVVYITWYWSSLWRTCTTSSNAVSNCYDFPVLWSVENNVQIVRALLMGGVAIGILGFILSLVGMECTYIGGKEKEKNRAIFIGSLCHTTSGLLSAAGYAVYARNITAEFFNPSFELKFDLGTPLFVGWAGSIFQFTGGLLYMISIYKLWSLDRRTIEDTVPAEEAVALHSIPTNISNSSDLPSKVSTVSELSLKSSSTLSSVSHKSHHLSKA"

     misc_feature    407..934
                     /gene="cldn10e"
                     /gene_synonym="si:busm1-52i16.2"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     exon            621..782
                     /gene="cldn10e"
                     /gene_synonym="si:busm1-52i16.2"
                     /inference="alignment:Splign:2.1.0"
     exon            783..861
                     /gene="cldn10e"
                     /gene_synonym="si:busm1-52i16.2"
                     /inference="alignment:Splign:2.1.0"
     exon            862..972
                     /gene="cldn10e"
                     /gene_synonym="si:busm1-52i16.2"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1266
                     /gene="cldn10e"
                     /gene_synonym="si:busm1-52i16.2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aggtaagcactttatcagttctctgtgcctcacttatcagtccatctctgagaatgtacactaagactcactcacattgacaacaagaaggacacattgtctcctgcgccagttctctactgttggtttgcagaaaagcaacaaaaaaaaaaaggatttagattaattgtgaccatgtgaggggaagactagttaaaaacttgttgaaaactcctaaaaggactaattttagtaaaaggttaaaaactagacaggcgcatgtgcagtaaattcagacaaaataggtttgaggaagaaaaaatggattgctaaagaggtacagacaggcagacaacaaggggaaaaaaaatcagacatcagtatctgagagtagagtagtgaactgaatatggaggtccgtgaaacgcagatctggggatttttactgaccgtattgggatggattttcattgcttgctctttggcaatggagggctggaaggtggccgctgctggcggccagggaggcagctctgtcgtctacattacttggtattggtccagtctgtggcggacctgcaccacttcctctaatgctgtctccaactgctatgactttcccgtgctctggtccgtggaaaataatgtccagattgtgagggcactactaatgggtggagtagccattggcattttggggttcattctgagcctggtagggatggaatgcacttacataggaggcaaagagaaggagaagaacagagccatcttcataggaagcctctgtcatactaccagtggtttgttatctgcagcagggtatgctgtctatgctcgcaacattacagcagaattcttcaatcctagttttgaattaaagtttgatctgggcacaccattgtttgttggatgggctggaagtatatttcaatttactggagggctcttgtacatgatatcaatttataagctctggtctctggacaggaggacaattgaggatacagttcctgctgaagaagccgtagccctgcattccattcccacaaatatctccaactcctctgaccttccctccaaggtgtctactgtgtctgagctctccttaaagtcatcttccactttgtccagtgtctcacataagtctcaccatctttccaaagcctgatgtttttcaaaacctatcatgggactcgatatgattgggacattcttgaacctctacatcatcagaaagtggaaaatatgtgcatatgtctatgtctgtctgtctgtctgtctctc

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