2024-03-29 23:06:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001329257 2836 bp mRNA linear VRT 14-FEB-2023 DEFINITION Ictalurus punctatus claudin-14-like (LOC108261078), mRNA. ACCESSION NM_001329257 VERSION NM_001329257.1 KEYWORDS RefSeq. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 2836) AUTHORS Zeng Q, Liu S, Yao J, Zhang Y, Yuan Z, Jiang C, Chen A, Fu Q, Su B, Dunham R and Liu Z. TITLE Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis JOURNAL Biol Reprod 95 (1), 19 (2016) PUBMED 27307075 REFERENCE 2 (bases 1 to 2836) AUTHORS Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z. TITLE Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets JOURNAL Comp Biochem Physiol Part D Genomics Proteomics 13, 60-69 (2015) PUBMED 25681604 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from KM870798.1. ##Evidence-Data-START## Transcript exon combination :: KM870798.1 [ECO:0000332] RNAseq introns :: partial sample support SAMN00739092, SAMN01906360 [ECO:0000350] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2836 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /chromosome="6" /map="6" gene 1..2836 /gene="LOC108261078" /gene_synonym="CLDN14a" /note="claudin-14-like" /db_xref="GeneID:108261078" misc_feature 1850..1852 /gene="LOC108261078" /gene_synonym="CLDN14a" /note="upstream in-frame stop codon" CDS 1910..2662 /gene="LOC108261078" /gene_synonym="CLDN14a" /note="claudin 14a" /codon_start=1 /product="claudin-14-like" /protein_id="NP_001316186.1" /db_xref="GeneID:108261078" /translation="
MGIMAQQFLGFFLGLLGLVGTLTSTVLPHWRQTAYFSTNFLTASYYMKGLWMECVSHTAGIYQCEFHRSMLSLPKDLLAARILMVLSSTTSILAAIVSAVGMKCTRCVQQSHAKGSIAVSGGSCFVLAGLFCLITTSWTTCDVIKDAYDLFSTVGMKYEIGLAVYISFSSAIFSICGGGMLCVASWDVRNYVSHKVADPQVPSPNKLQHPAACQANAAFESDHSSSPTFSLISEYRLSDSISESSIKSKT"
misc_feature 1964..2452 /gene="LOC108261078" /gene_synonym="CLDN14a" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
gtgctcttccgatctctggcttactcgagcatggtgtcctggctgtctctggtggtagttgatagtacagtcaacactggtgtctaaagcaacatctgtggagcaaaactttatgtccagtgagtgtttgttggctgtatcactgaacttgtcagggagaaacacactaatttgctaaatctggtgagacacggaacctcatgttgtgcacacaccaccatcttggtcaaaaatgtctggccatttgtgtgttaagaaagactttgcctaggcaaaattgtttgcatgacactgttggctcagttcaaatcttggtaccaccaagatgtcattttgggccttttgagcataacctataaccttattttgctcagtggcattgtaagacacattagataaaaccatctgccaaagttaatatcttcataactaaataaaaagtccagtctccactagtatgagacactcaacatgacatgtaaaacacgcacagacaagtagaaaagcctggacaagtttacctcctaaaacctctatattttaatgatcactgaatatgctgttattgttgttaggacaaaaatccatgtcttaaatttgtgttacacagctttaaaacatttcttacaaaacagatgtatttcttaccagaataagaaaaatcaggagtctggagatctcaaagagtcttccattgatagccttgctagctagcacactgtagcagatattgttcccacacaggatgagcagatgtgccacgttctccatatgccatggctgtggcattaccatgatctcatttatgatggcaagaactgtgttagtgctccagcttttgttatctgtgtttccatagaggagcatgattgccttggccaaatcccacagagcaccatgcacaactgcatcatcccgcacatcctgccagcctagcttcccatctgactgcagtgggccgaagaggataaatagtagacgagcttggctgcagtgggccgaagaggataaatagtagacgagcttggctgatgattggccagggtctgaagatgcatgtaagcctgaaataagcatcccttctgtttttccactgatcaaacatgacaccttgtagtaagaatgtgaaacagccaatcctctgggttgcttgtaacagctacctctattttccacggaagatgtgtggttttacacaaaaagttaaatacacggtgacattccagctcatcccaaccagctatcagcgtctgtgaaaaggtgttataaataaacttcagtctttcgttggttggtagtaacagagtgcatctcttgaacagtaaaccaagggatctgaaacgatcaagtattgtgttcaagtcttcagctttggatgatgtgcagtgaatcttctgcaaaatcatctggttcctccaggccaaagtggacaggtgcctcactatgcagttattgatgctttttgataccatgctgaaaacactggcttctactgctagaaaaaaaatatggaaagttttaatttctgcagatttggtcctccatacttgaaaaatgattttttagctgacaggtagtctaatattaagtcaaccacctcagctggcagcttctggaagaatccgactggacatccgttggcttttagtgttactgcagtaacgtttaacggcacattggcgccgtctagagcttctacgcactgtagaagttatagaagttgaggttttgtggttagttactgttcctacccacatgaggacaaaacacctgaggtttatcacttgagtcactttgacatgcagtcagtaatggataagattgactgaacacagacttggcagggaactgaacttttaacagttttaacattttttcaattaacttcactaaactttacacagcagtgatgggaattatggcacaacagttcctaggcttcttcctgggtctcctgggcctggtcggcactctgacttcaacggtgcttcctcactggcgccaaacagcttattttagcaccaattttctcaccgcatcatactatatgaaaggtctatggatggagtgtgttagccacacagctggcatttatcagtgtgaattccatcgatcaatgctttctctacccaaagatctgctggctgctcggattttaatggtactgtccagcaccacctcgattttagccgctatagtttcagctgtgggcatgaaatgtacccgctgcgtccaacagtcccatgccaagggctccatagctgtgagtggaggttcatgctttgtcctggctggccttttctgccttatcacaacatcctggacaacctgtgatgtcataaaagatgcttatgatctcttttctactgttgggatgaaatatgagatcggcctggctgtgtacatctctttctcatcagctattttcagtatttgtggaggtgggatgctctgtgtggcatcatgggatgtaagaaattatgtaagccacaaagtggcagacccacaggtaccaagcccaaataaactacagcatcctgcagcctgtcaagcaaatgctgcctttgaaagtgatcattcatcatcaccaactttttccttaatcagtgaatataggttaagtgatagcattagcgaaagtagtattaaaagtaaaacttgaagtaaaagtacagttaaaagtgaaaagttctggcaaaattaaacaccactcagtaatactattttttgagtgaaagggcagtgaatatggacatatctgcaaggccatatgctttatactttaaccaaaacttgaaattgcaaaatatagtttaataaaatgttaacactttgg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]