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2024-03-29 23:06:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001329257            2836 bp    mRNA    linear   VRT 14-FEB-2023
DEFINITION  Ictalurus punctatus claudin-14-like (LOC108261078), mRNA.
ACCESSION   NM_001329257
VERSION     NM_001329257.1
KEYWORDS    RefSeq.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 2836)
  AUTHORS   Zeng Q, Liu S, Yao J, Zhang Y, Yuan Z, Jiang C, Chen A, Fu Q, Su B,
            Dunham R and Liu Z.
  TITLE     Transcriptome Display During Testicular Differentiation of Channel
            Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis
  JOURNAL   Biol Reprod 95 (1), 19 (2016)
   PUBMED   27307075
REFERENCE   2  (bases 1 to 2836)
  AUTHORS   Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z.
  TITLE     Claudin multigene family in channel catfish and their expression
            profiles in response to bacterial infection and hypoxia as revealed
            by meta-analysis of RNA-Seq datasets
  JOURNAL   Comp Biochem Physiol Part D Genomics Proteomics 13, 60-69 (2015)
   PUBMED   25681604
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from KM870798.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KM870798.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN00739092,
                                           SAMN01906360 [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2836
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /chromosome="6"
                     /map="6"
     gene            1..2836
                     /gene="LOC108261078"
                     /gene_synonym="CLDN14a"
                     /note="claudin-14-like"
                     /db_xref="GeneID:108261078"
     misc_feature    1850..1852
                     /gene="LOC108261078"
                     /gene_synonym="CLDN14a"
                     /note="upstream in-frame stop codon"
     CDS             1910..2662
                     /gene="LOC108261078"
                     /gene_synonym="CLDN14a"
                     /note="claudin 14a"
                     /codon_start=1
                     /product="claudin-14-like"
                     /protein_id="NP_001316186.1"
                     /db_xref="GeneID:108261078"
                     /translation="
MGIMAQQFLGFFLGLLGLVGTLTSTVLPHWRQTAYFSTNFLTASYYMKGLWMECVSHTAGIYQCEFHRSMLSLPKDLLAARILMVLSSTTSILAAIVSAVGMKCTRCVQQSHAKGSIAVSGGSCFVLAGLFCLITTSWTTCDVIKDAYDLFSTVGMKYEIGLAVYISFSSAIFSICGGGMLCVASWDVRNYVSHKVADPQVPSPNKLQHPAACQANAAFESDHSSSPTFSLISEYRLSDSISESSIKSKT"
     misc_feature    1964..2452
                     /gene="LOC108261078"
                     /gene_synonym="CLDN14a"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      
gtgctcttccgatctctggcttactcgagcatggtgtcctggctgtctctggtggtagttgatagtacagtcaacactggtgtctaaagcaacatctgtggagcaaaactttatgtccagtgagtgtttgttggctgtatcactgaacttgtcagggagaaacacactaatttgctaaatctggtgagacacggaacctcatgttgtgcacacaccaccatcttggtcaaaaatgtctggccatttgtgtgttaagaaagactttgcctaggcaaaattgtttgcatgacactgttggctcagttcaaatcttggtaccaccaagatgtcattttgggccttttgagcataacctataaccttattttgctcagtggcattgtaagacacattagataaaaccatctgccaaagttaatatcttcataactaaataaaaagtccagtctccactagtatgagacactcaacatgacatgtaaaacacgcacagacaagtagaaaagcctggacaagtttacctcctaaaacctctatattttaatgatcactgaatatgctgttattgttgttaggacaaaaatccatgtcttaaatttgtgttacacagctttaaaacatttcttacaaaacagatgtatttcttaccagaataagaaaaatcaggagtctggagatctcaaagagtcttccattgatagccttgctagctagcacactgtagcagatattgttcccacacaggatgagcagatgtgccacgttctccatatgccatggctgtggcattaccatgatctcatttatgatggcaagaactgtgttagtgctccagcttttgttatctgtgtttccatagaggagcatgattgccttggccaaatcccacagagcaccatgcacaactgcatcatcccgcacatcctgccagcctagcttcccatctgactgcagtgggccgaagaggataaatagtagacgagcttggctgcagtgggccgaagaggataaatagtagacgagcttggctgatgattggccagggtctgaagatgcatgtaagcctgaaataagcatcccttctgtttttccactgatcaaacatgacaccttgtagtaagaatgtgaaacagccaatcctctgggttgcttgtaacagctacctctattttccacggaagatgtgtggttttacacaaaaagttaaatacacggtgacattccagctcatcccaaccagctatcagcgtctgtgaaaaggtgttataaataaacttcagtctttcgttggttggtagtaacagagtgcatctcttgaacagtaaaccaagggatctgaaacgatcaagtattgtgttcaagtcttcagctttggatgatgtgcagtgaatcttctgcaaaatcatctggttcctccaggccaaagtggacaggtgcctcactatgcagttattgatgctttttgataccatgctgaaaacactggcttctactgctagaaaaaaaatatggaaagttttaatttctgcagatttggtcctccatacttgaaaaatgattttttagctgacaggtagtctaatattaagtcaaccacctcagctggcagcttctggaagaatccgactggacatccgttggcttttagtgttactgcagtaacgtttaacggcacattggcgccgtctagagcttctacgcactgtagaagttatagaagttgaggttttgtggttagttactgttcctacccacatgaggacaaaacacctgaggtttatcacttgagtcactttgacatgcagtcagtaatggataagattgactgaacacagacttggcagggaactgaacttttaacagttttaacattttttcaattaacttcactaaactttacacagcagtgatgggaattatggcacaacagttcctaggcttcttcctgggtctcctgggcctggtcggcactctgacttcaacggtgcttcctcactggcgccaaacagcttattttagcaccaattttctcaccgcatcatactatatgaaaggtctatggatggagtgtgttagccacacagctggcatttatcagtgtgaattccatcgatcaatgctttctctacccaaagatctgctggctgctcggattttaatggtactgtccagcaccacctcgattttagccgctatagtttcagctgtgggcatgaaatgtacccgctgcgtccaacagtcccatgccaagggctccatagctgtgagtggaggttcatgctttgtcctggctggccttttctgccttatcacaacatcctggacaacctgtgatgtcataaaagatgcttatgatctcttttctactgttgggatgaaatatgagatcggcctggctgtgtacatctctttctcatcagctattttcagtatttgtggaggtgggatgctctgtgtggcatcatgggatgtaagaaattatgtaagccacaaagtggcagacccacaggtaccaagcccaaataaactacagcatcctgcagcctgtcaagcaaatgctgcctttgaaagtgatcattcatcatcaccaactttttccttaatcagtgaatataggttaagtgatagcattagcgaaagtagtattaaaagtaaaacttgaagtaaaagtacagttaaaagtgaaaagttctggcaaaattaaacaccactcagtaatactattttttgagtgaaagggcagtgaatatggacatatctgcaaggccatatgctttatactttaaccaaaacttgaaattgcaaaatatagtttaataaaatgttaacactttgg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]