LOCUS       NM_001315510             855 bp    mRNA    linear   INV 17-APR-2022
DEFINITION  Hydra vulgaris retinal homeobox protein Rx-B-like (LOC100212761),
            mRNA.
ACCESSION   NM_001315510
VERSION     NM_001315510.1
KEYWORDS    RefSeq.
SOURCE      Hydra vulgaris (swiftwater hydra)
  ORGANISM  Hydra vulgaris
            Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina;
            Anthoathecata; Aplanulata; Hydridae; Hydra.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF126249.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF126249.1, GAOL01023308.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN08648360, SAMN08648409
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Hydra vulgaris"
                     /mol_type="mRNA"
                     /db_xref="taxon:6087"
                     /chromosome="2"
                     /map="2"
     gene            1..855
                     /gene="LOC100212761"
                     /gene_synonym="manacle"
                     /note="retinal homeobox protein Rx-B-like"
                     /db_xref="GeneID:100212761"
     exon            1..350
                     /gene="LOC100212761"
                     /gene_synonym="manacle"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    116..118
                     /gene="LOC100212761"
                     /gene_synonym="manacle"
                     /note="upstream in-frame stop codon"
     CDS             122..790
                     /gene="LOC100212761"
                     /gene_synonym="manacle"
                     /note="homeobox protein manacle"
                     /codon_start=1
                     /product="retinal homeobox protein Rx-B-like"
                     /protein_id="NP_001302439.1"
                     /db_xref="GeneID:100212761"
                     /translation="

MSRETNLSFSVENILKHKHKKDKCLIYHESNKKTIEVEHFERNSLWLINPTNLSFSINDFSKQRISPDGRLLDKLNEKQDHLYGRKHRRVRTAFTHHQLTTLERTFETSHYPDVVLRERLASFTGLAESRIQVWFKNRRAKYRKHQLYDSSTTDLNDDTAYFTDNKKSHKKENISRTAKPKHIHHLYSEKTTSLPNLPGYNNLTNLKSVIKSPTIYGTLISF"

     misc_feature    order(383..397,401..403,452..454,470..472,509..511,
                     515..520,527..532,536..544,548..553)
                     /gene="LOC100212761"
                     /gene_synonym="manacle"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(389..391,398..400,518..520,527..532,539..541)
                     /gene="LOC100212761"
                     /gene_synonym="manacle"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    392..550
                     /gene="LOC100212761"
                     /gene_synonym="manacle"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            351..517
                     /gene="LOC100212761"
                     /gene_synonym="manacle"
                     /inference="alignment:Splign:2.1.0"
     exon            518..855
                     /gene="LOC100212761"
                     /gene_synonym="manacle"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tgctgtttccagtgaagtgtggttacaagtgaagtgtagtttggattaataacaagcgattaaaaactgtatgttcatttctgaaaaaagtcagtatctactacataagttagcatagacaatgtcaagggaaacaaatttatcgttttctgtagaaaacattttaaaacataagcataaaaaagataaatgcctaatctatcacgaatcaaataaaaaaaccattgaagttgaacattttgaacgaaactctttatggttaattaacccgaccaacctatcatttagtatcaatgatttttcaaaacaaagaatttcacctgacggacgacttttagataaattaaatgaaaaacaagatcatctttacggtcgaaaacatcgaagagtcagaacagcatttacccatcatcagttgacaactttagagagaacgtttgaaactagtcattatccagatgttgttctcagagaaagattagcatcgtttacaggattagccgaaagccgaatacaagtatggttcaaaaaccgtcgagcgaaatatcgaaaacatcaactttatgactcgtcaaccactgatcttaacgacgatacagcatattttacagacaataaaaagtctcacaaaaaagaaaatatatcaagaactgcaaaacctaaacatattcaccatttatattctgaaaaaacaacaagcttaccaaacctacctggatataataacttaacaaacttaaagtcagtaataaaatcaccgacaatttatggaactttgatatcattttgaattatttatattttatataactttgtacaaataaatataattagactaatatattattgctagtt

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