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2024-03-29 15:04:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001310849            1301 bp    mRNA    linear   VRT 13-MAY-2020
DEFINITION  Esox lucius homeobox B7a (hoxb7a), mRNA.
ACCESSION   NM_001310849 XM_010874647
VERSION     NM_001310849.1
KEYWORDS    RefSeq.
SOURCE      Esox lucius (northern pike)
  ORGANISM  Esox lucius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Esociformes; Esocidae; Esox.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BT079967.1.
            
            On Jul 21, 2015 this sequence version replaced XM_010874647.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BT079967.1, GH241232.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02724937, SAMN02724938
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1301              BT079967.1         6-1306
FEATURES             Location/Qualifiers
     source          1..1301
                     /organism="Esox lucius"
                     /mol_type="mRNA"
                     /db_xref="taxon:8010"
                     /chromosome="11"
                     /map="11"
     gene            1..1301
                     /gene="hoxb7a"
                     /gene_synonym="hoxb7; HXB7A"
                     /note="homeobox B7a"
                     /db_xref="GeneID:105013256"
     exon            1..472
                     /gene="hoxb7a"
                     /gene_synonym="hoxb7; HXB7A"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    7..9
                     /gene="hoxb7a"
                     /gene_synonym="hoxb7; HXB7A"
                     /note="upstream in-frame stop codon"
     CDS             82..729
                     /gene="hoxb7a"
                     /gene_synonym="hoxb7; HXB7A"
                     /note="homeobox B7"
                     /codon_start=1
                     /product="homeobox protein Hox-B7a"
                     /protein_id="NP_001297778.1"
                     /db_xref="GeneID:105013256"
                     /translation="
MSSLYYANALFSKYQAASSGFPTGVFPEQTSCAFASSSPRASGYASGSGGAAFSSSSSTLSGLYNNAGNMPTQTHSVYPSAYGLGCSPFEHSNLSMMCTGGEPSKLTSCGKAEQRQHEDSLRIYPWMRSSGADRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTTGPISPTADPPGEEDEEEDE"
     misc_feature    order(484..498,502..504,553..555,571..573,610..612,
                     616..621,628..633,637..645,649..654)
                     /gene="hoxb7a"
                     /gene_synonym="hoxb7; HXB7A"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(490..492,499..501,619..621,628..633,640..642)
                     /gene="hoxb7a"
                     /gene_synonym="hoxb7; HXB7A"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    493..651
                     /gene="hoxb7a"
                     /gene_synonym="hoxb7; HXB7A"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            473..1301
                     /gene="hoxb7a"
                     /gene_synonym="hoxb7; HXB7A"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
agactgtaattctgtaatatatcacagtacctcgtaaaaccgacactaaaacctcccggcctacaaatcaccggtcaaattatgagttcattgtattatgcgaacgctttgttttccaaatatcaagcagcaagttcgggttttccaactggggtctttcctgagcaaacttcttgcgcatttgcgtccagttcaccgcgagccagcggctatgcctcgggctctggcggcgcagccttttcctcctcttcctccacactgtcgggactgtacaataacgcagggaacatgcccacccagacccacagcgtgtatccctctgcgtacggtctgggctgctccccctttgaacactccaacctctccatgatgtgcaccggtggtgagccgtccaagctgaccagctgcggcaaagcggagcagaggcaacacgaggacagtttacggatctacccttggatgagaagctcaggtgcagacagaaagcgaggtcgtcagacgtacacgcgttaccagacgttagagcttgagaaggagttccacttcaatcgctacctgacacgcagaagacgcatagagattgctcacgcgctttgtctcacggagaggcagatcaaaatctggttccaaaaccggcggatgaaatggaagaaggagaacaagaccaccgggcctatctcccctacagctgacccgccgggcgaggaggacgaggaggaggacgaatagcgacggtgaaaagaggaatgagcactatatagatttggtagcctgttatactaaaaccgtaggggaaaaccgtgttccccagattcttacactgagtaaaacatacaatactacctactaagattaagtctaatgccacgtcttgcttcgttataagtacagtgaaattgtataaaggaaaccttcgtttctaagcgataggcctaatattgttgcttatattttcaaatagagatatataatctattgtgttttgccgtagacctgtaatactgctaaatcgtttgcgaaaagtagccagtacctgagaaaagtgatcggctctgcagcatccatgtttctgttttctttcatcttgttatcttctggatgtatattttttttttgactagctgtaagggctttacagctcatgtcaattgattttacgcattgttttttattcttgacgtgtggaccacgagatgtaggaatttgtatatttttgtgttgtgagggactatttgttgtttgttattcaattgcacaagtgttctgttgatgtcaataaaaataaaagtaatcaatgatac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]