2024-03-29 15:04:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001310849 1301 bp mRNA linear VRT 13-MAY-2020 DEFINITION Esox lucius homeobox B7a (hoxb7a), mRNA. ACCESSION NM_001310849 XM_010874647 VERSION NM_001310849.1 KEYWORDS RefSeq. SOURCE Esox lucius (northern pike) ORGANISM Esox lucius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT079967.1. On Jul 21, 2015 this sequence version replaced XM_010874647.1. ##Evidence-Data-START## Transcript exon combination :: BT079967.1, GH241232.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02724937, SAMN02724938 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1301 BT079967.1 6-1306 FEATURES Location/Qualifiers source 1..1301 /organism="Esox lucius" /mol_type="mRNA" /db_xref="taxon:8010" /chromosome="11" /map="11" gene 1..1301 /gene="hoxb7a" /gene_synonym="hoxb7; HXB7A" /note="homeobox B7a" /db_xref="GeneID:105013256" exon 1..472 /gene="hoxb7a" /gene_synonym="hoxb7; HXB7A" /inference="alignment:Splign:2.1.0" misc_feature 7..9 /gene="hoxb7a" /gene_synonym="hoxb7; HXB7A" /note="upstream in-frame stop codon" CDS 82..729 /gene="hoxb7a" /gene_synonym="hoxb7; HXB7A" /note="homeobox B7" /codon_start=1 /product="homeobox protein Hox-B7a" /protein_id="NP_001297778.1" /db_xref="GeneID:105013256" /translation="
MSSLYYANALFSKYQAASSGFPTGVFPEQTSCAFASSSPRASGYASGSGGAAFSSSSSTLSGLYNNAGNMPTQTHSVYPSAYGLGCSPFEHSNLSMMCTGGEPSKLTSCGKAEQRQHEDSLRIYPWMRSSGADRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTTGPISPTADPPGEEDEEEDE"
misc_feature order(484..498,502..504,553..555,571..573,610..612, 616..621,628..633,637..645,649..654) /gene="hoxb7a" /gene_synonym="hoxb7; HXB7A" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(490..492,499..501,619..621,628..633,640..642) /gene="hoxb7a" /gene_synonym="hoxb7; HXB7A" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 493..651 /gene="hoxb7a" /gene_synonym="hoxb7; HXB7A" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 473..1301 /gene="hoxb7a" /gene_synonym="hoxb7; HXB7A" /inference="alignment:Splign:2.1.0" ORIGIN
agactgtaattctgtaatatatcacagtacctcgtaaaaccgacactaaaacctcccggcctacaaatcaccggtcaaattatgagttcattgtattatgcgaacgctttgttttccaaatatcaagcagcaagttcgggttttccaactggggtctttcctgagcaaacttcttgcgcatttgcgtccagttcaccgcgagccagcggctatgcctcgggctctggcggcgcagccttttcctcctcttcctccacactgtcgggactgtacaataacgcagggaacatgcccacccagacccacagcgtgtatccctctgcgtacggtctgggctgctccccctttgaacactccaacctctccatgatgtgcaccggtggtgagccgtccaagctgaccagctgcggcaaagcggagcagaggcaacacgaggacagtttacggatctacccttggatgagaagctcaggtgcagacagaaagcgaggtcgtcagacgtacacgcgttaccagacgttagagcttgagaaggagttccacttcaatcgctacctgacacgcagaagacgcatagagattgctcacgcgctttgtctcacggagaggcagatcaaaatctggttccaaaaccggcggatgaaatggaagaaggagaacaagaccaccgggcctatctcccctacagctgacccgccgggcgaggaggacgaggaggaggacgaatagcgacggtgaaaagaggaatgagcactatatagatttggtagcctgttatactaaaaccgtaggggaaaaccgtgttccccagattcttacactgagtaaaacatacaatactacctactaagattaagtctaatgccacgtcttgcttcgttataagtacagtgaaattgtataaaggaaaccttcgtttctaagcgataggcctaatattgttgcttatattttcaaatagagatatataatctattgtgttttgccgtagacctgtaatactgctaaatcgtttgcgaaaagtagccagtacctgagaaaagtgatcggctctgcagcatccatgtttctgttttctttcatcttgttatcttctggatgtatattttttttttgactagctgtaagggctttacagctcatgtcaattgattttacgcattgttttttattcttgacgtgtggaccacgagatgtaggaatttgtatatttttgtgttgtgagggactatttgttgtttgttattcaattgcacaagtgttctgttgatgtcaataaaaataaaagtaatcaatgatac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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