2024-03-29 20:25:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001309768 1355 bp mRNA linear INV 17-APR-2022 DEFINITION Hydra vulgaris homeobox protein OTX2-like (LOC100211908), mRNA. ACCESSION NM_001309768 VERSION NM_001309768.1 KEYWORDS RefSeq. SOURCE Hydra vulgaris (swiftwater hydra) ORGANISM Hydra vulgaris Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF114441.1. ##Evidence-Data-START## Transcript exon combination :: AF114441.1, DN248875.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00242134, SAMD00242135 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1355 /organism="Hydra vulgaris" /mol_type="mRNA" /db_xref="taxon:6087" /chromosome="8" /map="8" gene 1..1355 /gene="LOC100211908" /gene_synonym="CnOtx" /note="homeobox protein OTX2-like" /db_xref="GeneID:100211908" CDS 22..744 /gene="LOC100211908" /gene_synonym="CnOtx" /function="cell movement; anterior specification" /note="homeobox protein Otx" /codon_start=1 /product="homeobox protein OTX2-like" /protein_id="NP_001296697.1" /db_xref="GeneID:100211908" /translation="
MTMSDSPLDSPLNMNSGAIKSETPPKRRRERTTFTKAQLDVLEDMFGKTMYPDVFMREEVAKKINLAEARVQVWFKNRRAKFRRSRENPGRHFDNNKYLGREKLMPEDLIRTFPKSSRGTPHSYPNTSNYPPLWKYPVADHSPPYAGNNIIEEPVYRQSNPYAPISPYEYNFPSGRPPYFTQPPYYSPSAPSQDYLSNSVSAPSSTNSISSLSFSQHDTRNELNLPASYWSGAGYMGANM"
misc_feature order(103..117,121..123,172..174,190..192,229..231, 235..240,247..252,256..264,268..273) /gene="LOC100211908" /gene_synonym="CnOtx" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(109..111,118..120,238..240,247..252,259..261) /gene="LOC100211908" /gene_synonym="CnOtx" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 112..270 /gene="LOC100211908" /gene_synonym="CnOtx" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
cacgagtttatcttgtgcgcgatgaccatgtccgatagccccttggatagtccattaaacatgaattctggagcaataaagtcagagactccacctaaaagacggcgtgaaaggaccacttttacaaaagcacaacttgacgtgctggaagatatgtttggaaaaactatgtatccggatgtatttatgagagaagaagtagctaaaaaaattaatttggctgaagcccgagtacaggtttggttcaaaaatcgacgtgcaaagtttcgacgctctcgtgaaaaccctggtcgacattttgataataataagtatttagggcgtgagaaattaatgcccgaagatctcattcgaacctttcctaaaagtagtagaggcactccacactcttacccaaatacaagcaattatcctccgctatggaaatatccagttgcagaccacagtccaccatatgcaggaaataatataattgaagaaccggtttatagacaatcaaacccatacgctcccatctcaccttatgaatataattttcctagtgggagaccaccatactttactcagccaccttattatagtccgtctgcacctagtcaagattatctttcaaattccgtttcggcgccatcaagcacaaatagtatatcaagtttatctttttcgcaacatgacactagaaatgaattaaatcttcctgcgtcttattggagtggagcagggtatatgggtgcgaatatgtagtttaattataaagcacctcaaaaatggaaatctatttcagatagacacaacaaaattgatttaaaaatcaaacagttgtacatagaaaagctttttttacaattcattaaaaaaagatatcctttagatttaagtctaagaccaataaaccaatcgattgcgtaaattacaaaactaattggttgtgtctagaaaacaattgtacagattggtagtttcaaaaaatactactggactaaaacattagaacaactcacaagttgttttatttgcatttttaaaatatatataccatgttttaaatttttatcgtagaactattatgcagttatttttgttcaactttttatttatgtataaatcgatatgacactgctatattaccagtgaaaatgtcggtttagcaaaatttcaagcctttatgaaaaggaaaatggctgaaacaatgatttttttcacaattttgttttaacaaatttattttgttaataaaaaaaatgtagcagcgatcaaaaatggaaaaatatatgttattgaaacaactttttaattttctatttatcaattaactgatttaacgtataaacctgttttagattttttctcgtgcc
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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