LOCUS       NM_001309758            1781 bp    mRNA    linear   INV 17-APR-2022
DEFINITION  Hydra vulgaris homeobox protein Hox-D10-like (LOC100197809), mRNA.
ACCESSION   NM_001309758
VERSION     NM_001309758.1
KEYWORDS    RefSeq.
SOURCE      Hydra vulgaris (swiftwater hydra)
  ORGANISM  Hydra vulgaris
            Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina;
            Anthoathecata; Aplanulata; Hydridae; Hydra.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from L22787.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: L22787.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMD00242133,
                                           SAMD00242134 [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Hydra vulgaris"
                     /mol_type="mRNA"
                     /db_xref="taxon:6087"
                     /chromosome="7"
                     /map="7"
     gene            1..1781
                     /gene="LOC100197809"
                     /gene_synonym="cnox-1; Cnox-3; hox1"
                     /note="homeobox protein Hox-D10-like"
                     /db_xref="GeneID:100197809"
     CDS             22..810
                     /gene="LOC100197809"
                     /gene_synonym="cnox-1; Cnox-3; hox1"
                     /note="HOM/HOX homeodomain transcription factor;
                     homeoprotein; homeobox A1"
                     /codon_start=1
                     /product="homeobox protein Hox-D10-like"
                     /protein_id="NP_001296687.1"
                     /db_xref="GeneID:100197809"
                     /translation="

MYSVSGDITFAPKIYNHSPILTTNNTCKTTRSERGYSHTLEYFPNRPIIAKSQLNNKTPIWTQQNASKITNYTAPYNKNIDENYRRPLELFKQETPYNKARRKHFEHYQLYQNTKEHALLKNVAAEKKITTELIVLDDLKEYKGEYQPNDSQSSDNQSNDAFRKRCSFGHSKIIELEKEFKYNKYLSRDRRVEFARNLELSESQIKIWFQNRRMKQKKEQTVNDLTKKDDDSPWFRIEKLHSLTEPFLSTNQVSPMFHTFLN"

     misc_feature    order(508..519,523..525,574..576,592..594,631..633,
                     637..642,649..654,658..666,670..675)
                     /gene="LOC100197809"
                     /gene_synonym="cnox-1; Cnox-3; hox1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    511..672
                     /gene="LOC100197809"
                     /gene_synonym="cnox-1; Cnox-3; hox1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(511..513,520..522,640..642,649..654,661..663)
                     /gene="LOC100197809"
                     /gene_synonym="cnox-1; Cnox-3; hox1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

atacgcataagtacgaaggtgatgtattcagtcagcggagatatcacgtttgcaccaaagatttataatcatagtccaattttaacgacaaacaatacatgtaaaaccacgcgcagtgaacgcggttattcccatactttagaatactttccaaatagaccaataattgcaaagtctcaactaaataacaaaacaccaatatggactcagcaaaatgcaagtaaaataacaaattatacagcgccttacaataaaaacattgatgaaaattacagacgacctttggagttatttaaacaggaaactccatataacaaagcacgaagaaaacattttgaacattatcagctatatcagaacacaaaagaacacgctttattaaaaaatgttgctgcggaaaaaaaaattactactgaattaatagtattagacgatttaaaggaatacaaaggagaatatcagccaaacgacagccagtcgagtgacaaccaatctaatgatgcttttagaaaacggtgctctttcggacatagcaaaataattgagctagaaaaagagttcaagtacaacaaatatttgagtcgtgatcgtcgtgttgagtttgcacgaaatcttgagcttagtgaatcccaaattaaaatttggtttcaaaacaggcgcatgaagcagaaaaaagaacaaacagtgaatgatttaaccaaaaaagacgatgattcaccctggtttcgcattgaaaagttacattcactaacagaaccatttctatcaactaaccaagtatcaccgatgtttcatacctttttgaactgaaagctctaaaaagttctaattaaaagcgctagtcgagtagtttaaattgtccgtttactataaaaccgtttttgtctttttttttaaaaaaaaaaagtctattacctatttcggacttgacttggtttacaaaagtttcgtaaaataaaaaattatttatgcatgaaaaattaaccattctatcggtttaataaagctcgatttaatactcattgataaaaaaaaaaacacgatgaaaatcccgtaggagccgtctaattctatcatcttatattgttacgcagcttataatctaatataaatagaaaaaactaaaattttcttctttaatgcattttttcaaagacttattctaaatatgacgtagtttacttttctaaattagtaaaaaacctgaaaaacatatatcgactatataaacgaaaagttgcaaagtcaatgaccatactcgataaaaactaatggttaactcacccaagtaatctgatacacatctaaatgtatataagtaattttaaaaaaatattataaccgtgctgtttaaaaatgtggcaaaccatgtggccggcaaagttgttaacgtaataagatgttgaagagtctcgtggccggcaaagttgttaacgtaataagatgttgaagagtctcgtgatcatgaagagttataaagatcatgaaggtcataaagagtggaaatttagctaaacctgatataaaacgttcgataaagaaaaaattagtctttggagatgaactttctttaatcaataatgtttataacgagtgacatgattcaagttaacgactatctgtctgttttaagttttttggtgaccaactaaatctattttaaaataataactttgaccaaagaattaacacagctgtaaatactgtaaataatttgtgtaaatagtttatatatatatatatatatatataaaaaaaaaaaaaaaaaaaaaaccgacgag

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